Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0636 ATGGAGCTTGCACCTGTGAAATGTGAACTGAGCCCAAGAAACCATAGGTTGCTTGTTATAGATGGCAGTGAGGTTATTGCTGCTAAGTGTGTCAAAAGGAGGCGAAGATGTTCGTCTATGTCAGTGTTAGGTGGCAATGAACAACAAGGTGAAAAGTTAGAAGAACATAAACAACTTGGTACTGCCACCACTGTGAAGAGAAGTTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGAAGGTTTGAAGCACATCTATGGGATAAAGGAACATGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTGTATTTGGGAGCTTATAATGATGAAGAAGCGGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAACATCAACTTTCACAAATTTTCCTGTGTCTGATTATGAGAAAGAAATTGAGATAATGAAAACAGTAACTAAAGAAGAATATCTTGCTTCACTGAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCACCATCACAATGGAAGATGGGAAGCAAGAATTGGGAGAGTGTTTGGCAACAAGTACCTATACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGTGCATATGACATTGCAGCAATTGAGTACAGAGGCATAAATGCTGTGACAAACTTTGACCTGAGCACCTACATCAGATGGCTAAGACCAGGAACACATCCTATTGCTTCACATGACCCTCAACCCTTAGCTACCTCTAACTCAATGCAAACAAGAGGGAACATTGAGGTATCCAACTCTAACATGCATTCATTCTCCTCAGCTGAATTAGACAGTACCAAGAAGCAAGACTTTTCCAAGTATATGAACCCTTTGAGCCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCTACTGTGTTCAGAGAATTGATGCAGAGAAATCTGAACTCCTCTGGTGAGGAATACCCACAAGAAGGCAATGATGGAAATGGAGGAACTTATTACAGTGAAAACACCAGTAACTCTTACTTTTCCTCTTCTGATATCAACAGATTACCAAACCTGGAGTCACCAGAAGACACTTCATTGCCTATGTATCATGGAACTGTGCAATCCCTATGGAATACTTCTTTCAACATGTCTAACTGA 1176 0.4201 MELAPVKCELSPRNHRLLVIDGSEVIAAKCVKRRRRCSSMSVLGGNEQQGEKLEEHKQLGTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGTSTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLRPGTHPIASHDPQPLATSNSMQTRGNIEVSNSNMHSFSSAELDSTKKQDFSKYMNPLSPCNKPSSPTALGLLLKSTVFRELMQRNLNSSGEEYPQEGNDGNGGTYYSENTSNSYFSSSDINRLPNLESPEDTSLPMYHGTVQSLWNTSFNMSN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0636 391 MobiDBLite consensus disorder prediction 324 349 - -
Vra7g0636 391 Pfam AP2 domain 171 222 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 Pfam AP2 domain 69 128 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 385 - -
Vra7g0636 391 CDD AP2 171 232 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 ProSiteProfiles AP2/ERF domain profile. 172 230 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 PRINTS Ethylene responsive element binding protein signature 212 232 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 SUPERFAMILY DNA-binding domain 69 138 IPR016177 GO:0003677
Vra7g0636 391 SMART rav1_2 70 142 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 SMART rav1_2 172 236 IPR001471 GO:0003700|GO:0006355
Vra7g0636 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 385 - -
Vra7g0636 391 Gene3D AP2/ERF domain 69 138 IPR036955 GO:0003700|GO:0006355
Vra7g0636 391 Gene3D AP2/ERF domain 171 232 IPR036955 GO:0003700|GO:0006355
Vra7g0636 391 SUPERFAMILY DNA-binding domain 171 232 IPR016177 GO:0003677
Vra7g0636 391 ProSiteProfiles AP2/ERF domain profile. 70 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0636 Vra-Chr7 11987806 11989850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0636 66 280 AP2-EREBP Transcription Factor Family AT5G57390 58.986 1.08e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vra7g0636 AP2 5.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0636 - - gmx:100798483 686.411