Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0635 ATGGCAATCGGAAAGAACCTTTTGGTTCTGTTTTGTTTGGGAGTCTTAATCCCTACCCTGAATGCGAATCCCTTGGAGAATGATGAGTATTGGAAGAACCATGAAAACGAGTTTGATACATACTGGAAGGCAAGGGCAGAAAAGGCTGCAGAGGACAATAAAGCAGCATACTTTGAAGATCCATATTCAGTCTCAGGAAACTTGACTTCCACTGTCACCGAACTTATAGTTGGGAAGGATACGCGAAGGAACTTGAGGGGAAAGAACATTCATGAGGGTTGCATGGCGACGAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAACTGGGCCAACAACAGGCAGAAGCTTGCAGATTGTGTTCAGGGCTTTGGAAGAAACACTGTTGGAGGAAAAGGTGGTCCGATCTACGTGGTAACAGACCCTTCAGATGATAACATGGTTGACTTAAAGCCAGGAACTCTCCGCCATGCAGTTACACGTAATGGTCCGTTGTGGATCATCTTTGAACGCAACATGATCATCAACCTGAAGCAGGAGCTGATCATGACCAGCGACAAGACCATTGATGGAAGAGGCGTTGATGTCTACATTTCCAATGGTGCTGGCATCACCATCCAGTTCATCAAGAACGTGATCATTCATGGAATTAAGATCTACGACATTTCGGTTCATGGTGGTGGGCTGATCAGAGATTCTGAGACACATTATGGGCTGAGGACTCAGAGTGATGGAGATGGCATTTCCATCTTTGGTTCTAGCAACGTTTGGATCGATCACGTTTCGATGAGAAATTGCTACGATGGACTTATCGATGCCATCATGGGATCCACTGCCATTACGATTTCCAACAGCCATTTCACAGACCACAACGAGGCGATGCTGTTCGGTGCGAGCGACAGCTACGATGCAGATAAGATCATGCAAATCACTCTGGCATTCAACCACTTTGGGAAGAGATTGATTCAAAGGATGCCGAGATGCAGACATGGTTTCTTCCATGTGGTTAACAACGATTACACTCACTGGGAAATGTATGCGATTGGTGGGAGCATGAACCCGACGATCATAAGCGAGGGTAACAGATTCATTGGCCCTGACAACATATATGCTAAGGAGATCACAAAGAGAGAATACTCTCCTGAGAGCGTGTGGACACATTGGCAGTGGAGATCAATCAACGATGAGTACATGAACGGAGCATTTTTTGTACAATCTGGGCCTGAGCTTGTTAACAGACCATTCTCAAGGCTAGACATGATCAAAGCCAAGCCAGGAAGTTACGTCGGAAGGCTTACACGCTATGCTGGAAGCCTTAAGTGCAGAGTGGGTTTCCCTTGCTAA 1344 0.465 MAIGKNLLVLFCLGVLIPTLNANPLENDEYWKNHENEFDTYWKARAEKAAEDNKAAYFEDPYSVSGNLTSTVTELIVGKDTRRNLRGKNIHEGCMATNPIDRCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPIYVVTDPSDDNMVDLKPGTLRHAVTRNGPLWIIFERNMIINLKQELIMTSDKTIDGRGVDVYISNGAGITIQFIKNVIIHGIKIYDISVHGGGLIRDSETHYGLRTQSDGDGISIFGSSNVWIDHVSMRNCYDGLIDAIMGSTAITISNSHFTDHNEAMLFGASDSYDADKIMQITLAFNHFGKRLIQRMPRCRHGFFHVVNNDYTHWEMYAIGGSMNPTIISEGNRFIGPDNIYAKEITKREYSPESVWTHWQWRSINDEYMNGAFFVQSGPELVNRPFSRLDMIKAKPGSYVGRLTRYAGSLKCRVGFPC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0635 447 Gene3D - 97 440 IPR012334 -
Vra7g0635 447 Pfam Pectate lyase 179 363 IPR002022 -
Vra7g0635 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Vra7g0635 447 PANTHER PECTATE LYASE 7 447 - -
Vra7g0635 447 Pfam Pectate lyase, N terminus 37 85 IPR007524 GO:0030570
Vra7g0635 447 SMART amb_all 172 369 IPR002022 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Vra7g0635 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Vra7g0635 447 PANTHER PECTATE LYASE 18-RELATED 7 447 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0635 Vra-Chr7 11970532 11972288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0635 38 447 Polysaccharide Lyase AT1G14420 60.329 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0635 K01728 - gmx:100798579 733.791