Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0622 ATGGCTGGTGAGAAGCTGAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAAGGCTTCCATGCTCCCCTGAGCATATCCAAACCTTTTGGGTTCAAAACTCTCAACCTTCTTTCCAAGGCTCAAAATCCTTGGTTAATGTGGTGAATGTGAGGGATAGGCGGCCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGACGATGATGAGGATTTTGAGGTATTCCCACATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGATGGAAAACAAGCTTGAACCCGAAAGGAAAGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAGCTAGAAAAAGACTATGGCATGCTGAAAGCTCGCTATGACATTCTCAAAAGGGACTATGACAATCTCGTTCAAGAGAATGACAAACTCAAGGAAGAGGTTTATTCTCTGATGAAGGTGATTCCCAGAGAGAAAGAGAAACAGAATTTGGATGATACCAGCTGTGATGCTGTCAACTCAGGGCATAAAGAGCAGAAGGATTTGATCATAAATGGAGGTTCTAAAAATGAATCCAAAGTGGCACTTCCTGTTATGGTAATAAGCAAACAGAAAGATGCTAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCATTGATGGAAACCAATCCTCACTCTTTGAGCCTGCAGATTCCTCTCATGCTCTGGAACCAGACCACTCGGATTTCTCACAGGATGAGGAAGACATCCTCAGCCAAAACATGCCACTTCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCTGAAAATCCTTTCACGTTCCGGTTCCCAGTTGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA 960 0.4385 MAGEKLNGGSSMTLLLQKERLPCSPEHIQTFWVQNSQPSFQGSKSLVNVVNVRDRRPFFRGVEREENDDDEDFEVFPHQPGKKRRLTSEQVQFLESNFEMENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGMLKARYDILKRDYDNLVQENDKLKEEVYSLMKVIPREKEKQNLDDTSCDAVNSGHKEQKDLIINGGSKNESKVALPVMVISKQKDANSAKSDVLDSESPHFIDGNQSSLFEPADSSHALEPDHSDFSQDEEDILSQNMPLLPKFEVEYVCYDEPPENPFTFRFPVEDQTFCFWSC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0622 319 Pfam Homeodomain 82 135 IPR001356 GO:0003677
Vra7g0622 319 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Vra7g0622 319 SUPERFAMILY Homeodomain-like 71 139 IPR009057 -
Vra7g0622 319 Pfam Homeobox associated leucine zipper 137 175 IPR003106 GO:0006355|GO:0043565
Vra7g0622 319 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
Vra7g0622 319 MobiDBLite consensus disorder prediction 260 274 - -
Vra7g0622 319 SMART HOX_1 79 141 IPR001356 GO:0003677
Vra7g0622 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 318 IPR045224 GO:0003700
Vra7g0622 319 CDD homeodomain 80 138 IPR001356 GO:0003677
Vra7g0622 319 Gene3D - 77 142 - -
Vra7g0622 319 PANTHER HOMEOBOX LEUCINE ZIPPER FAMILY PROTEIN 1 318 - -
Vra7g0622 319 Coils Coil 143 177 - -
Vra7g0622 319 MobiDBLite consensus disorder prediction 248 274 - -
Vra7g0622 319 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677
Vra7g0622 319 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0622 Vra-Chr7 11711289 11714814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0622 22 267 Homeobox Transcription Factor Family AT3G01470 41.270 1.62e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g0622 Homeodomain 4.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0622 - K09338 gmx:100804328 484.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0622 7 11711289 11714814 Vra11g1271 11 15343864 15345921 PCT