Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0618 ATGGGTGCAGGAGACTACTACAAGATCCTCAAGGTGAACCGCAATGCCTCGGATGAAGAACTCAAGAGGGCATATAAGAAGTTGGCCATGAAGTGGCATCCAGATAAGAACCACCAGCACCACACTGTTACGAAAGAAGAAGCTGAGGCTAAGTTCAAGCAGGTTTCGGAGGCTTATGATGTTCTCAGCGACCCCAAGAAGCGTCAGATCTATGATTTTTATGGCCACTATCCCTTGAACTCTGTGAAGGTGAAGGAGGAGAAGGGTGATGGGGGTTTTAGGGTCCCCAAGAACGAGAACGTTGGTGTGGTTGAGAGAAAATTGGTGTGCACGCTTGAGGAACTTTACAAAGGTTGCAAAAAGAAGTTGAAGATCTCAAGGACTATACATCATGAATTCGGTAAGTTGAAAACTGTGGAAGAGATACTGAAAATAGATATCAAACCTGGTTGGAAGAAAGGCACAAAAATAACATTTCCTGGGAAAGGCAACCAAGAAGCAGGAGCTAGTGCTGCTGATGATCTAATCTTTGTGGTGGATGAGAAACAACATGCTTTATTCAAGAGGGATGGAAATGATTTGGTTGTGACACAAAAAATCTTACTTGTAGAGGCTCTTGTGGGAAAGACTTTCAATTTAACAACCTTGGATGGAAGAGAGCTCACAATTCAAGTGACTGATGTTGTGAAACCAAAATTTGTTTTGGTGGTCCCAAATGAAGGAATGCCCATCTCAAAGGAACATGGAAAGAAAGGAAACTTGAGAATCAAGTTTGATGTTATGTTCCCATCAAGGCTTACCACCCAACAGAAGTATGAGCTGAAAAAGATTTTGAGCAACACTGATGACTAA 852 0.4237 MGAGDYYKILKVNRNASDEELKRAYKKLAMKWHPDKNHQHHTVTKEEAEAKFKQVSEAYDVLSDPKKRQIYDFYGHYPLNSVKVKEEKGDGGFRVPKNENVGVVERKLVCTLEELYKGCKKKLKISRTIHHEFGKLKTVEEILKIDIKPGWKKGTKITFPGKGNQEAGASAADDLIFVVDEKQHALFKRDGNDLVVTQKILLVEALVGKTFNLTTLDGRELTIQVTDVVKPKFVLVVPNEGMPISKEHGKKGNLRIKFDVMFPSRLTTQQKYELKKILSNTDD* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0618 283 Pfam DnaJ C terminal domain 105 263 IPR002939 -
Vra7g0618 283 SMART dnaj_3 4 67 IPR001623 -
Vra7g0618 283 Pfam DnaJ domain 5 72 IPR001623 -
Vra7g0618 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Vra7g0618 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Vra7g0618 283 PRINTS DnaJ domain signature 47 67 IPR001623 -
Vra7g0618 283 PRINTS DnaJ domain signature 67 86 IPR001623 -
Vra7g0618 283 Gene3D - 102 183 - -
Vra7g0618 283 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 280 - -
Vra7g0618 283 CDD DnaJ_C 104 266 - -
Vra7g0618 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 184 IPR008971 GO:0006457|GO:0051082
Vra7g0618 283 Gene3D - 184 264 - -
Vra7g0618 283 CDD DnaJ 5 64 IPR001623 -
Vra7g0618 283 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Vra7g0618 283 SUPERFAMILY Chaperone J-domain 4 79 IPR036869 -
Vra7g0618 283 Gene3D DnaJ domain 2 91 IPR036869 -
Vra7g0618 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 280 - -
Vra7g0618 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 271 IPR008971 GO:0006457|GO:0051082
Vra7g0618 283 ProSiteProfiles dnaJ domain profile. 5 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0618 Vra-Chr7 11490414 11492862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0618 6 74 C2H2 Transcription Factor Family AT1G74250 37.681 3.08e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0618 K09510 - gmx:100786068 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0618 7 11490414 11492862 Vra11g1281 11 15617974 15620483 PCT