Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0602 ATGGATCCGGGTGGGATGATGAACGAGGGTTCCTTTGGGAATAATGGGAGCGGCAATACGGCGCCGTATAGCTTGGCGGAGATCTGGCAGTTTCCGCAAGCGATTAATGGCGGCGGAGGATTGGGTCTCCGGAGCCCGCAGTTCGAACATGGGCCGGGGCAGTTTGGGGATTTGCCTCCAAGACCCAACAATGGGCTTGGGACAAGTAACACCAGAAAGCGGCGAGACTCAGAGGACGATTCCGCTAAGACCGTGTCCACCAGCAATGCCGTGAATGAGGGTGATGGAAAACGTGTTAAAGCAACGGCAAATGGTGATGGTAATGGTAAAGGTGAAGGAGAAGTCAGTTCAGGAAAGCCTGCGGAGCAAAGCGCAAAACCTCCTTTGGAACCTCCCAAGCAAGATTACATTCACGTCCGAGCCAGAAGGGGTCAAGCCACTGATAGCCACAGTCTTGCAGAACGAGCTCGAAGGGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTGATAAGGTTATCGGGAAAGCGTTGGTCCTTGATGAAATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCGAGACTGAACTCCGGTATTGAAGCCTTTCCTCCTAAGGATTTTGGTCAGCATGCATTTGATCCCGCGGGCATGCCGTTCGGTTCACAAGCTCCAAGAGAGTATAGCAGAGGATCTTCACCTGAATGGTTACATATGCAGGTAGGAGGAGGTTTTGAAAGAACAACGTAG 801 0.4981 MDPGGMMNEGSFGNNGSGNTAPYSLAEIWQFPQAINGGGGLGLRSPQFEHGPGQFGDLPPRPNNGLGTSNTRKRRDSEDDSAKTVSTSNAVNEGDGKRVKATANGDGNGKGEGEVSSGKPAEQSAKPPLEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCDKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQHAFDPAGMPFGSQAPREYSRGSSPEWLHMQVGGGFERTT* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0602 266 Coils Coil 192 212 - -
Vra7g0602 266 Pfam Helix-loop-helix DNA-binding domain 149 196 IPR011598 GO:0046983
Vra7g0602 266 Gene3D - 142 218 IPR036638 GO:0046983
Vra7g0602 266 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 212 IPR036638 GO:0046983
Vra7g0602 266 MobiDBLite consensus disorder prediction 1 22 - -
Vra7g0602 266 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 195 IPR011598 GO:0046983
Vra7g0602 266 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 266 IPR024097 GO:0006355
Vra7g0602 266 MobiDBLite consensus disorder prediction 34 133 - -
Vra7g0602 266 CDD bHLH_AtBPE_like 135 220 - -
Vra7g0602 266 PANTHER BNAC05G07950D PROTEIN 1 266 - -
Vra7g0602 266 SMART finulus 151 201 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0602 Vra-Chr7 11190004 11192314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0602 1 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 60.669 3.86e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0602 HLH 2.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0602 - - gmx:100784478 446.817