Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0600 ATGAAGGGATGGGATGGGATTCAATCTTCTTTGTCTTCTCGATCGAGTTCCACGTTGGGCCATCAAGCTTCCTCTCGGTTGGGCCAGCAAGCTTCCTCTCGATCTGTTCGACTCGGTCGAGTTCAGCCTCAGGCTCCGACTCACCGGACCATCTTCTGCAACGATCGCGAGGCCAATTTTCCTATCCGATTCAAGGGGAATTCTATATCAACCACCAAATATAACTTCTTCACCTTTTTGCCAAAAGGACTATTTGAGCAGTTCAGACGAGTGGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCAACCACCCCTATTAGTCCGGTTTCTCCAATAACTAATGTGCTTCCTCTGTCTCTGGTGCTTCTTGTCTCTCTTATCAAGGAAGCTTTTGAAGATTGGAAGCGTTTTCAAAATGACATGTCCATAAACAACAATGGTATAGACGTTTTGCAAGATCAAAAGTGGCAGTCTATATCTTGGAAGAAGTTGCAGGTTGGAGACATTGTGAAGGTTAAACAGGATGGATTCTTTCCTGCAGATCTGCTTTTCTTGGCAAGCACTAATGCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTATGTGACTCCAGAGAAGGCATCCGAGTTTAAAGGTGAAATTCAATGTGAACAACCAAACAATTCATTGTATACCTTTACTGGAAATCTTATAACCCAAAAACAAACGCTGCCTCTCAGTCCAAATCAAATTTTGTTGCGGGGTTGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTTATATTTACTGGACATGAAACAAAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGAAAGCTTGACAAGCTCATACTAACATTATTTGCAACTCTCTTCATGATGTGTTTCATTGGAGCCATAGGCAGTGCTATCTTCGTAAATAAAAAATATTTTTACTTACATCTTGATTCATCAGAAGAGGGCTCGGCACAGTTCAACCCCAGAAATAGATTTTTGGTTTTTATTCTGACTATGTTTACCCTAATCACACTATACTCAACAATCATTCCCATTTCACTTTATGTGTCCATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAAGACTTGTCCATGTACCATGCTGAAACAAATACACCTGCATTAGCCAGAACATCAAATTTGAATGAAGAACTTGGGCAGGTGGAATACATTTTCTCTGATAAAACTGGAACTCTAACAAGAAATCTAATGGAGTTCTTCAAGTGTTCGATTGGAGGAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGATTAGCAGAGCGCAATGGAATGAAGATTGAGGAAAATATTTCTTCCAAAGCAGTGCAAGAGAGAGGTTTTAATTTTGATGATGATAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTTTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTGTTGCCAGAGGGTGATGAATCCCCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCAAAAAACTTTGGTTTCTTTTTCTACAGACGCACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGACGTGTCTTATGAGATTTTAAATGTGCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTATGCCGTTATCCTGATGGAAGGCTTGTCCTATACTGTAAGGGTGCTGATACTGTAATCTATGAGAGATTGGCTGATATTAGTAATAGTATCAAGAAAGTCACCAGGGAGCATTTGGAACAATTTGGATCTGCCGGACTTCGCACATTATGCTTAGCCTACAAAGATTTGCATCCTGATGTTTATGAAACCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAATTGGATGAGGTGGCAGAACTTATAGAAAATGATCTCATTTTAATTGGTAGCACAGCCATAGAAGACAAGCTTCAAGAGGGTGTACCTGCTTGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCTATAAACATAGCCTATGCATGCAACTTGATAAACAACGAGATGAAGCAATTTGTGATTAGTTCAGAAACTGATGCGATCAGAGAAGTTGAAGACAGGGGTGACCAAGTGGAGATTGCACGGTTTATCAAAGAAGAAGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCACAGAACTATTTTCACTCCCTATCTGGACCAAAATTAGCTCTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTCAACATCAGTTTGAATTGTCATTCTGTTGTTTGCTGTCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGTATGGTTAAGAAAGGTGCTCACAAAATAACACTTAGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAATTTCGTTACCTTGCAGACTTGCTTCTTGTTCATGGCAGGTGGTCTTATTTGCGAGTTTGCAAGGTTGTCTTATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTCTGGTTTACGTTTCAAACTGGATTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCGTTATATAATGTTATCTTCACAGCGCTACCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAGAAATGTTTTCTTTAAATGGAAAGTTGTGGCAATATGGGCATTCTTTTCTATTTACCAATCTCTGATATTCTTCTATTTTGTGAGTACAACAAATTTAAGTGCTAAAAACTCAGCAGGCAAGATCTTTGGATTGTGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACCGTCAACTTGCGACTGCTTATGATTTGTAATTCCATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAGGAAAATATTTATTTTGTCATTTATGTCTTGATGACTACGTTTTACTTCTACGTCATGCTACTTCTAGTTCCTGTTGCTGCACTTTTCTGCGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTCCCCCTATGATTATCAGATTATTCAAGAAATGCATAGAGATGAGCTAGATAACACTGGTAGGGCACAATTGTTGGAGATAGGGAACCAGCTTACACCAGCTGAGGCAAGGAGTTATGCAATATCTCAACTCCCACGTGAGATATCAAAGCACACCGGGTTCGCCTTTGATTCACCTGGGTATGAATCCTTTTTTGCCGCACAGCTTGGTGTATATGCCCCACCCAAGGCTTGGGATGTTGCTAGACGAGCCAGTATGAGAACCAAGCCCAAGATTGGCCAGCAGAAGTAA 3699 0.3971 MKGWDGIQSSLSSRSSSTLGHQASSRLGQQASSRSVRLGRVQPQAPTHRTIFCNDREANFPIRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVLPLSLVLLVSLIKEAFEDWKRFQNDMSINNNGIDVLQDQKWQSISWKKLQVGDIVKVKQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLITQKQTLPLSPNQILLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGSAIFVNKKYFYLHLDSSEEGSAQFNPRNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLSMYHAETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGLAERNGMKIEENISSKAVQERGFNFDDDRLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADTVIYERLADISNSIKKVTREHLEQFGSAGLRTLCLAYKDLHPDVYETWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEDRGDQVEIARFIKEEVKKELKKCLEEAQNYFHSLSGPKLALVIDGKCLMYALDPSLRVMLLNISLNCHSVVCCRVSPLQKAQVTSMVKKGAHKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRVCKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSIYQSLIFFYFVSTTNLSAKNSAGKIFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMTTFYFYVMLLLVPVAALFCDFVYQGVQRWFSPYDYQIIQEMHRDELDNTGRAQLLEIGNQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRTKPKIGQQK* 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0600 1232 MobiDBLite consensus disorder prediction 1 40 - -
Vra7g0600 1232 SFLD p-type atpase 411 911 IPR044492 -
Vra7g0600 1232 Gene3D - 693 900 IPR023214 -
Vra7g0600 1232 CDD P-type_ATPase_APLT_Dnf-like 66 1020 - -
Vra7g0600 1232 MobiDBLite consensus disorder prediction 1 43 - -
Vra7g0600 1232 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 22 1227 - -
Vra7g0600 1232 Pfam Phospholipid-translocating P-type ATPase C-terminal 888 1138 IPR032630 -
Vra7g0600 1232 ProSitePatterns E1-E2 ATPases phosphorylation site. 431 437 IPR018303 -
Vra7g0600 1232 Pfam Cation transport ATPase (P-type) 526 621 - -
Vra7g0600 1232 SUPERFAMILY HAD-like 417 902 IPR036412 -
Vra7g0600 1232 PRINTS P-type cation-transporting ATPase superfamily signature 429 443 - -
Vra7g0600 1232 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Vra7g0600 1232 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 22 1227 - -
Vra7g0600 1232 Pfam E1-E2 ATPase 149 385 - -
Vra7g0600 1232 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 832 939 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g0600 1232 SUPERFAMILY Calcium ATPase, transmembrane domain M 63 1137 IPR023298 -
Vra7g0600 1232 Gene3D - 129 294 - -
Vra7g0600 1232 SFLD Haloacid Dehalogenase 411 911 - -
Vra7g0600 1232 SUPERFAMILY Calcium ATPase, transduction domain A 149 290 IPR008250 -
Vra7g0600 1232 Gene3D - 558 692 IPR023299 GO:0000166
Vra7g0600 1232 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 493 698 IPR023299 GO:0000166
Vra7g0600 1232 Pfam Phospholipid-translocating ATPase N-terminal 51 115 IPR032631 -
Vra7g0600 1232 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 64 1146 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0600 Vra-Chr7 11149889 11170519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0600 24 1231 Primary Pumps ATPases AT1G59820 79.404 0.0 2066
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0600 K14802 - gmx:100815547 2318.12