Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0580 ATGAAGAGGTCAAGGGATGATGCTTACATGAGTCCACAACATAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACTGGTGTCATAGCAAGGGTGAAGGAGCTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTTAACACCTTCTTACCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAATTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTACAGAAAGGAAACTAAGTCCATCACTGAGGTTTACGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGACCTTCTTGAGGAGTTTACGCATTTTCTTCCTGATACTTCAGGAACAGCCTTTAATCACTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCAATGCCAACACTGAGGCAAATGCATGTTGAAAAGAGAGAGAGGAACATTGCTTCACAAGGTGATCACGACTTTCGTGCTGACCATCCTGATCCAGAACACGACAGAGGTTTGATCAAGGCTGATAAGGATCAGAGGAGGCGTGGTGAGAAGGAAAAGGAAAGTAGAGAAGAGAAAGACAGGAGACAGCGGGAAAGGGATGACAGAGATTATGATCATGATGGTAGTAGGGAAAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGCGTTGAACCAATGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCTTGTGACGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACAAAGCCCCGAGGATTACCAGGAATTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGGCCAATTTGCTGGGAAAACATGCAGACCTTATGGAGGGATTTGATGAATTTTTGACTCAATGTGAAAAGAACGAAGGATTCCTTGCTAGTCTTCTGAAAAAAAAATCCTTTTGGCATGAAGGACATGGACCTAAACCAATGAAGGTTGAGGATAGGGACCGTGATAGGGATGACGGGACGAAAGAAAGGGATCGTCGAGAAAGGGACAAATCCAATGCAACTGCCAACAAGGATGGTTCTGCTCCTAAGATGTCTCAATATGCCAGCAAAGATAAGTATTCAGGAAAGCCTATAAGTGAACTGGATCTTTCCAACTGTGATCAATGCACTCCCAGTTATCGCCTTCTGCCCAAAAATTACCTAGTACCGCCAGCCAGCCAGAGAACAGAGCTTGGTGCTGAGGTGTTGAATGATTACTGGGTTTCTGTTACTTCGGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAGGAACTTTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGATGCATAGAAAGACTATATGGAGATCACGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAACAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACTAAGAGCTTGAGCACTAAAGTCTTACTTGCTGAAATCAAAGAAATTAGTGAGAAGAAAAGAAAAGAAGACGACGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTTCCGTCTCGATCCCAAGGTCCAGAGGATACAGAAGATGTTGTCAAGGATAGGAATAAGTCTGCCAAAAGTAGCACTGAAGTTGTTGCTGGTGATGGTAATCCTGTAATGAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTCCATTTGAGCAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATGCTAAGGTTAAAAAGGATAATCATCTTGATTCGGACAGCTTTGCACAAAAGACTGAAGCCCTAGGTAGTAATATGCAGCAGGGTAAAATAAATATAAATGCATCTATACCTGATGAAATATCAAGAGCCAATAAGCAAGATCATTCCACTGAACGGTTGGTGAATGCTGATGTCTCACGATCCTCGGCTGGGGAACAAAATAATAGAAGTACAAATGTGGATAACGCAACAGGACTTGCTGCTACTCCATTAAGACCTGGTAATATATCTTCCGTAGGAGGAGTTGGTTTTCCTTCATTAGAGGGTGCTGACTCTGCACGACCAGTCACATCAACAAATGTGGCCATCATTGAAGACTCTAAAGTTCACAGACATCGGGAAGAACCTGTCGGACACTTCAGATGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAAGATAATTTTGCAGTTTATGGACATACTAGTTCGGAGGCAGTTCATAAAGGAAAGGATAGTAACATTTCCCAACCATACCAAAACAGGCACGGGGAAGTAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTGGAGGATAGTGAAAATGCTTCAGAAAATGGAGATATTTCTGGCACAGAGTCTGCTGATGGTGAGGAGTGTTCTCCAGAACATGAGGATGGGGGTCATGATCATGATGACAAGGCTGAGAGTGAAGGTGAGGCAGAAGGAATGGCTGATGCCAATGATGTTGAAGGGGATTGTGCCTCATTGCCATATTCAGAACGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACGTTGCATGAGAAAGAAAGGATTGGTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTATTTAGACTCCATCAGACATTGTATGACAGGATACGATCTGCAAAGGTTAACTCATCGTCTTCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAACGCCCTCTACAATTTACTAGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTAGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAGCAAGCTGCTTCAATTATATGCATACGAAAAATCAAGAAAACCTGGAAGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTTCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCCGAAGTGACTACTGTATCAATGGACCCTAATTTTTCGGCCTATCTGCACAATGACTTCCTATCTATCGTCCCAGACAAAAAGGAGAAGTGTGGAATTTACCTGAAGAGGAATAAGCGCAAGAATGGCAGTGGTGATGAATTTTCAAGCCAGAGCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGACACTGAAGACCTTTTATATCAAACAAGAAGAAAAAAAAGGAGGTCCTTGCATCAGAGCAGTTCATGCCTTGAACAATCAAAGTCCTCAATTTCTTCAAGCAGAGAACAACGAGTTTGCAAATTATTTTCAAATTGA 4236 0.406 MKRSRDDAYMSPQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTAFNHYASTRNPLLRDRSSAMPTLRQMHVEKRERNIASQGDHDFRADHPDPEHDRGLIKADKDQRRRGEKEKESREEKDRRQRERDDRDYDHDGSRENLSHKRKSACRAEDSGVEPMHDTDENFGMHPVSYACDDKSSLKSMYSPVIGYLDKVKEKLQSPEDYQEFLKCLNIYCKEIIARHELQSLVANLLGKHADLMEGFDEFLTQCEKNEGFLASLLKKKSFWHEGHGPKPMKVEDRDRDRDDGTKERDRRERDKSNATANKDGSAPKMSQYASKDKYSGKPISELDLSNCDQCTPSYRLLPKNYLVPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSTKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDTEDVVKDRNKSAKSSTEVVAGDGNPVMNPKNLNINRNGDENFPFEQSHSCKQWQPSGHAKVKKDNHLDSDSFAQKTEALGSNMQQGKININASIPDEISRANKQDHSTERLVNADVSRSSAGEQNNRSTNVDNATGLAATPLRPGNISSVGGVGFPSLEGADSARPVTSTNVAIIEDSKVHRHREEPVGHFRCEREEGELSPNGDFEEDNFAVYGHTSSEAVHKGKDSNISQPYQNRHGEVVRGEAGGENDADDEGEESPHRSLEDSENASENGDISGTESADGEECSPEHEDGGHDHDDKAESEGEAEGMADANDVEGDCASLPYSERFLVNVKPLAKYVPPTLHEKERIGRVFYGNDSFYVLFRLHQTLYDRIRSAKVNSSSSERKWRASNDTDSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSPSPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSIVPDKKEKCGIYLKRNKRKNGSGDEFSSQSMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQTRRKKRRSLHQSSSCLEQSKSSISSSREQRVCKLFSN* 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0580 1411 MobiDBLite consensus disorder prediction 424 456 - -
Vra7g0580 1411 Coils Coil 556 576 - -
Vra7g0580 1411 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 1 38 - -
Vra7g0580 1411 Pfam C-terminal domain of Sin3a protein 1126 1372 IPR031693 -
Vra7g0580 1411 MobiDBLite consensus disorder prediction 872 918 - -
Vra7g0580 1411 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1392 - -
Vra7g0580 1411 MobiDBLite consensus disorder prediction 1013 1040 - -
Vra7g0580 1411 MobiDBLite consensus disorder prediction 230 317 - -
Vra7g0580 1411 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Vra7g0580 1411 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Vra7g0580 1411 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Vra7g0580 1411 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 23 38 - -
Vra7g0580 1411 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
Vra7g0580 1411 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Vra7g0580 1411 PANTHER SIN3B-RELATED 1 1392 IPR039774 GO:0003714
Vra7g0580 1411 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 884 907 - -
Vra7g0580 1411 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 762 836 - -
Vra7g0580 1411 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 424 473 - -
Vra7g0580 1411 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 799 825 - -
Vra7g0580 1411 Pfam Sin3 family co-repressor 490 580 IPR013194 -
Vra7g0580 1411 MobiDBLite consensus disorder prediction 1055 1079 - -
Vra7g0580 1411 SMART hdac_interact2seq4b 487 587 IPR013194 -
Vra7g0580 1411 MobiDBLite consensus disorder prediction 959 1083 - -
Vra7g0580 1411 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Vra7g0580 1411 MobiDBLite consensus disorder prediction 770 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0580 Vra-Chr7 9738356 9749661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0580 28 119 WRKY Transcription Factor Family AT4G12020 60.638 7.30e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra7g0580 Sin3a_C 3.7e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0580 K11644 - gmx:100781798 2258.8