Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0566 ATGGAGTTCGAGGTGAAGGTGGTGGGAGGTATAGACTCCTGTTTCGTATCCCTTCCCCTCTCACTCATCCAAACTCTTCAGTCTACGCGCTCGACACCTCTTCCTCAAATCCTCGCTCTCGAGCTTCGCTCTCCTCCTCACACCTGGTTCGTCTCTTGGTCCGGCGCCACTTCTGCTTCTTCCGCCATAGAGGTTTCTTCTCAATTTGCGGAGTGCATTTCCTTGCCGAATCACGCTATTGTCCAAGTGAGAGCTGCTCCTAATGTGCCGCACGCTTCTCTCGTCACCATAGAACCGAACACGGAGGACGACTGGGAAATCTTGGAGCTCAACGCCGACCTAGCCCAGGGAATAATCCTCAACCAGGTCAGGATTGTCTATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCATACTGTCATCACATTTCAAGTGACGTCTGTTGAACCGAAGAATGTGGTAGTGCAATTAATGGGAGGAACTAAAGTTGCTGTTGCTCCAAAAAGTCGGAAAAAAAGTTTGGATTCAGCAGGAGATTCACGCCAAGACTCCTTTAATAAAGAACACACTTCCAAGATGCTGCTTCGTTTACAAGATCCAAAAGGATTATGTAGTACCAGTACTCATGTCAAAGGAGTTGACCTCAATGTAGGGCTTACTACTGTTGCTTTTGTTCACCCAGAAACAGCCAAAAGATACTCATTCAACATGCTTCAGTTGGTTTTGATAGTACCCAGAGTTTCCAAGGAGAATGTTAATATTTCAAGAACTAATATTATGAAAAACAGAGGTGGTTCAACTACTAATGAAGTTGAAAATGTAAATATTGACAAGACAGAATATCGACAAGCAATTGTTCAGTTGATGATTTCAGAATCTGTGGGTGAAGGACATGTGATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTACGTTCATGGGTTTATTTGAAGGCATGCAATACTATTTTGGAAAAAAATATTCCTTCAACCTCTCTTTTTCCGTGTAAATTCAAACTACTAAGGCAGGAGAATTCTGTTGAGAAAGATGGTCTAGAAGTTTCTCATGGCCACAATCATCACATTGATAAAAAAGTTCAAGCGAAAGCTACATCAGGTTTCTTTGTGGATACGATAGATTGGTCAATCCAAAATAAACTTCTAGAAGCTGTCTCTGAAGAATCCAATCACAAAGCAGAAGAAGAGACTACAAATCAATCTCAGAATCCAAGGGAATTACAGAATCTTGTAAGACTATGGTATATGACACAAATTAAGGCAATTACTTCCATTTCAGGTATGGAGGTTAGTTCCTTGGTTATGGGTGATAAAACCTTGCTTCATTTTGAAGTAAGCTGTTACAAGCTTGGGAGTAATGAGAAGGCTCAGTTTGCGTATAGTCCTTCAGAGAACAGTGACAATGCAGCTGAAATGTTGTTTTTATTGACATTTGGTGAAGAATATCTGCATAATGGGAAACTTAGTGCGTATGAAGTTGCTCTTGGTGGAGAACTTGATAACATTAGTATTGTGGACCTGAAGGTTTTCGAAAGGATGAAATTGTGTGATCCTGTGTCTATTGTTTCTATAGAAGAGAGAACGCCTGAAGACCACATTAGTTCAAATCTATCTCCGCTTGGCTGGATGGAGAAAACTGCAGATGATGTTATCAACAGAATGTTGATATTGTTATGTTCTGCATCTGGTTTGTGGTTTGGCACACACAACTTACCACTCCCCGGACATGTTCTCATATATGGACCACCTGGCTCTGGAAAAACTATATTAGCAAGAACTGTGGCAAAATCTCTTGAGAACCGTGAAGACATCTTTGCACACATAATTTTTATTTCCTGCTCAAAACTTGCCCTTGAGAAGGTCCCAGTTATTCGCCAAGAACTTGCAAACCATGTAACTGAAGCTGTAAATCATGCCCCTTCTGTGGTTATCTTTGATGATCTTGATAGCATAATTTCTTCCCCTGACTCTGAAGGATCTCATCAGCCAATATCTGTTGCTGGACTCACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAGTCATGTGGATTTGGACCAATAGCCTTCATAGCTTCCGTACAATCACTAGAGAAGATACCACAATCTTTAAGCTCTTCAGGAAGATTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCCTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGGCGTCACTTACAGTGCAATGATGACATCCTGCTTGACGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTTCATTGTGCTGTTCGCCGTTTTCTGCCATCTAATGCTTCCATTGATGTACGTGAGAGTCCAGCTATACTAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGAATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGCTGCCATCAAAGTTTCCAAAAATTTTTGCACAAGCACCTTTAAGGTTGCGGTCAAATGTGCTTTTATACGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTAAAAGGGCCAGAGCTGTTAAACAAATACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTTGATGAATTTGATTCTATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTGAATCAATTTTTGACCGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACAAGTAGACCAGATTTACTTGATGCTGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCTTGGCACGAGAGATTGGAAATTCTTGCTGTACTTTCTAGAAAGTTGGCAATGGACAAGGATATTGATTTGACTACAATAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAATGAGGATGGTTTAAGGACGGAAAAAACACCCATAATTACTGATGCTCTTCTAAAGTTCACAACATCCAAGGCCAGACCATCTGTTTCAGAAGAAGAAAAGAGAAGACTCTACAATATATATCACCAGTTCCTGGATTCAAAGAGATCTGTTGCTGCCCAGTCAAGAGATTCGAAAGGAAAGAAGGCAACTTTAGCTTGA 3381 0.417 MEFEVKVVGGIDSCFVSLPLSLIQTLQSTRSTPLPQILALELRSPPHTWFVSWSGATSASSAIEVSSQFAECISLPNHAIVQVRAAPNVPHASLVTIEPNTEDDWEILELNADLAQGIILNQVRIVYEGMRFPLWLHGHTVITFQVTSVEPKNVVVQLMGGTKVAVAPKSRKKSLDSAGDSRQDSFNKEHTSKMLLRLQDPKGLCSTSTHVKGVDLNVGLTTVAFVHPETAKRYSFNMLQLVLIVPRVSKENVNISRTNIMKNRGGSTTNEVENVNIDKTEYRQAIVQLMISESVGEGHVMVAKSLRLYLRASLRSWVYLKACNTILEKNIPSTSLFPCKFKLLRQENSVEKDGLEVSHGHNHHIDKKVQAKATSGFFVDTIDWSIQNKLLEAVSEESNHKAEEETTNQSQNPRELQNLVRLWYMTQIKAITSISGMEVSSLVMGDKTLLHFEVSCYKLGSNEKAQFAYSPSENSDNAAEMLFLLTFGEEYLHNGKLSAYEVALGGELDNISIVDLKVFERMKLCDPVSIVSIEERTPEDHISSNLSPLGWMEKTADDVINRMLILLCSASGLWFGTHNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDIFAHIIFISCSKLALEKVPVIRQELANHVTEAVNHAPSVVIFDDLDSIISSPDSEGSHQPISVAGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASVQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHCAVRRFLPSNASIDVRESPAILREDFSQAMLDFLPVAMRDITKSASDDGRSGWNDVGGLVDIRNAIKEMIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILAVLSRKLAMDKDIDLTTIANMTEGFSGADLQALLSDAQLAAVHDVLDNEDGLRTEKTPIITDALLKFTTSKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDSKGKKATLA* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0566 1126 Gene3D - 734 813 - -
Vra7g0566 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 811 IPR027417 -
Vra7g0566 1126 SUPERFAMILY Cdc48 domain 2-like 90 168 IPR029067 -
Vra7g0566 1126 CDD AAA 580 731 - -
Vra7g0566 1126 SUPERFAMILY ADC-like 10 85 IPR009010 -
Vra7g0566 1126 Pfam ATPase family associated with various cellular activities (AAA) 586 731 IPR003959 GO:0005524|GO:0016887
Vra7g0566 1126 Pfam ATPase family associated with various cellular activities (AAA) 873 1000 IPR003959 GO:0005524|GO:0016887
Vra7g0566 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1099 IPR027417 -
Vra7g0566 1126 Pfam AAA+ lid domain 1025 1060 IPR041569 -
Vra7g0566 1126 PANTHER AAA-FAMILY ATPASE 3 1123 - -
Vra7g0566 1126 ProSitePatterns AAA-protein family signature. 973 991 IPR003960 GO:0005524|GO:0016887
Vra7g0566 1126 SMART AAA_5 869 1005 IPR003593 -
Vra7g0566 1126 SMART AAA_5 582 734 IPR003593 -
Vra7g0566 1126 Gene3D - 90 170 - -
Vra7g0566 1126 Gene3D - 834 1096 IPR027417 -
Vra7g0566 1126 Pfam Peroxisome biogenesis factor 1, N-terminal 95 168 IPR015342 GO:0005524|GO:0005777|GO:0007031
Vra7g0566 1126 PANTHER - 3 1123 - -
Vra7g0566 1126 Gene3D - 1004 1083 - -
Vra7g0566 1126 Gene3D - 532 733 IPR027417 -
Vra7g0566 1126 CDD AAA 839 1002 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0566 Vra-Chr7 9512184 9540559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0566 586 801 Calmodulin-binding Proteins AT3G56690 29.515 1.83e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0566 K13338 - gmx:100803882 1900.95