Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0563 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAGCTCCTTAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCAAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGCTTCAAAACGTGGTTTTGTCACCAAAAGTCAGGGTCAAGCACAACACAAAGCCAAACTTAACAAGCAACGAGTTACCAGAGCATCAAAGAGGAGATGCAGTGAGCAGCATGGTGTATGAAGCAAATGCAAGAGTGAGGGACCCTGTGTATGGGTGTGTAGGGGCAATTTCATCTCTTCAGCAACAGATTGATGTGTTGCAGACCCAATTGGCAGTGGCTCAAGCGGAAGCAGTGCATCTCAGAGTGCGTCAGAATGCATCTCTCTACAGCCCCACTAGCCCTACAAACAGTGCTTCTCAATCTTCAAAGATCATTCACTCACAACCAAAACCTATTTTTGACATCGACATGGACATGGTGGTGGACCACACCACCTACACTGATTCAATGTGGTGA 576 0.4705 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELQNVVLSPKVRVKHNTKPNLTSNELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQNASLYSPTSPTNSASQSSKIIHSQPKPIFDIDMDMVVDHTTYTDSMW* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0563 191 ProSiteProfiles LOB domain profile. 12 137 IPR004883 -
Vra7g0563 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 1 176 - -
Vra7g0563 191 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 176 - -
Vra7g0563 191 Coils Coil 116 136 - -
Vra7g0563 191 Pfam Lateral organ boundaries (LOB) domain 13 63 IPR004883 -
Vra7g0563 191 Pfam Lateral organ boundaries (LOB) domain 83 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0563 Vra-Chr7 9462655 9465804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0563 1 191 AS2 family AT1G31320 61.735 5.30e-68 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra7g0563 LOB 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0563 - - gmx:100306560 277.33