Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0557 ATGGAAAGAGGCAGAGGCAGTTACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAGTTACCACGGTCGTGACAGTGGCACTTACCAAGGCCGTGACAGTGGCAGTTATGGTATCGGTGAGGGCAATGCTGGCCACTACACTTCTGATGATCGATACGGCAACACTGGTCGTAGCAGTTACGGTGGCCGTAGAGGAAGGTTCTACCAACATCCCCAGTTAAGTGGTAGCAATGAACACAGGTCTCCTTCTCAACCACAGCCACAAGAACGGTGGCAACGGAAGTTAAATCCTTCTTCCCCTGGTGAATCTTCAAAACCGCATGCTTCTCAACCTCGACCTGAAACTGAAACTGAAACTGGAATTGAATCTGAAAAACGGACAAGTCAAAATCCAGACGTAGGATCTTTGAGGATATCAGAGGAAAAAGCAGAGAGCATCAGACCAATGCGTAGGCCTGACAAAGGAGGAAAAATAGCAGCTAAGAGAAACACCCTTGAGGTGAACCATTTCCTTGTTGAGTTTGATGAAAAGAGAGTAATATTCCACTATGACGTGGATGTGAAGGCCAAGGCTCCGTCCACCAACAACCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTTGCCGATCACGCGTTGCCGACTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGCTTGAAGGAAGGAACCTTCGATGTGGAGGTGGTGAAAGGTGGGGAAGCAAGAACGCTTTGCTATTCGGTCACTCTTACACTTGTGAAGGACCTTGAACTCCGCAAGCTGAGAGATTACTTGAGTGGAAAGGTTCCTGGAACTCCTGCAGATGTTTTACAGGGCTTGAATTTGGTGGGGAAGGAGAATCCCAGTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTCCCCAAGAATCATCCCATAAGTCCGGAAGACTCTAAAGGGATAATTGCAACTGGAGGATTTCAGCAGAGTCTTAAGACCACTTCTCAGGGCTTGTCCTTGTGCGTCGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGAAGTTTCTGCACGAACAGATTGAGAATTTCGATTTGAGGAAGTTTCCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTCGGGTTGAAAGTTAAGGTAACCCACCGGACGACGAAGCAGAAATACACTATTACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTGGACACTGAGGGACGGAATCCAGCAGGGGAATGTAGTCTAATTGATTACTTTTGCAGGAAGCATAAGGTGGAGATTCAACACACGGAAATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCCATGGAGTTATGCATCTTGATCAAGGATCAAAGATGCCCCAAAGAGAATTTACTGAATACAGATGCTGGCAATGTGTTGAGAAGAATGTCACTGGCTTCTGCAGGAGAAAGGAGAAGTAAAATATGCACTATAGTGAAATCAGAGGAAGGACCGTGTGGAGGTGGTGTTATGGATAGTTTTGGCATGCGTGTGGACACTTCCATGACAAAAGTGACAGGACGCGTAATTCAGCCCCCAGAATTGAAGATAGCTAATCCAAAGGGTGGGATTATTAGTATGACACTGGAAGTGGGGAAACCTCAGTGGAATCTGAAGGGAGGATCAATGGTGGAAGGCAAGCCGCTTAAGTGTTGGGGCATTCTTTATTTTGCTGATTCCAAGTGCCAATTTAAAAGCGAACAGTTCATTAAAAATCTTCGTAAGAAGTGCGGATTACTCGGCATTAGAATGGAGAAGCCAGCTTGTTCTCAAGAATTTCCTATGTCGACTCTTCGCAGATACGATTCGCTGTGTGAGTTACTTCAAAACATTGATGATCAGGTTCAAAAGGAATGTGAACAACGGCTGCAGATTCTTCTTTGTGTGATGGCCGATAAAGATTCAGGTTACAAGAGCCTAAAATTGATCGCTGAGACCAAGGTTGGGGTGGTGACACAATGCTGCTTACGTTGTCATGCTAATGATGCAAAGGATCACTTCCTTACAAATCTTGCCTTCAAGATGAATGCCAAAATTGGAGGTAGTAATGTTGAACTAATGAACAGGCTCCCAAACTTTGAAGGCGAAAGTCATGTTATGTTCATAGGGGCTGATGTTAACCATCCACCTTCCAGGGACACCAACAGTCCATCAATTGCTGCTGTAGTTGCCACTGTTAATTGGCCTGCTGCAAATCGCTATGCTACACGTGTTTGTGCTCAAGGTCACCGGGTTGAAAAAATTTTGAACTTTGGAAGAATTTGCCTTGAACTAGTTTCTTATTACAATAAGGTGAACAAAGTGTGGCCAGAAAAAATTGTTATCTTTCGAGATGGCGTGAGCGAAAGTCAATTTAACATGGTTCTGACGGAAGAGCTGCAAGATTTGAAATCAGTGTTTGGTGACTCAAATCACTTGCCAACGATCACTCTTATTGTTGCACAAAAGCGACATCAAACTCGATTTTTTGTGAAGGGTAAAAGTTTCAATGTGCTACCAGGAACAGTTGTAGACACAGAGGTGGTACATCCTTATGAATTTGACTTCTACCTTTTTAGTCACAAAGGGATATCGGGTACAAGCAAGCCCACTCATTATCATGTGTTATGGGATGAACACAAATTTACATCTGATGATTTGCAGAAACTTATATACGAAATGTGCTTTACCTTTGCAAAGTGCACTGGACCAGTATCTTTAGTTCCTCCAGTTTACTATGCTGATCTAGCTGCATACAGAGGCCGGGTATACTACGAAGCAATGAATGAAGCCAAATCTGATCGCTCTGCCACTACTGGATCTTCTTCTTCCTCAGTTTCTTCTGCTTTAAATGATGAAGGCTGTTACAAGTTGCACCCTGACGTGGAAAACCTTATGTTCTTCATTTGA 2979 0.4468 MERGRGSYGGRSSYRGRGSYHGRDSGTYQGRDSGSYGIGEGNAGHYTSDDRYGNTGRSSYGGRRGRFYQHPQLSGSNEHRSPSQPQPQERWQRKLNPSSPGESSKPHASQPRPETETETGIESEKRTSQNPDVGSLRISEEKAESIRPMRRPDKGGKIAAKRNTLEVNHFLVEFDEKRVIFHYDVDVKAKAPSTNNRPQKISKFLLSSIRDKLFADHALPTSAYDGDKSIFSSERLKEGTFDVEVVKGGEARTLCYSVTLTLVKDLELRKLRDYLSGKVPGTPADVLQGLNLVGKENPSKQCDTVGCCFFPKNHPISPEDSKGIIATGGFQQSLKTTSQGLSLCVDFSVLSYFGEEKPVLKFLHEQIENFDLRKFPKFKKKVEDLLVGLKVKVTHRTTKQKYTITKLTPMVTSKIRFPVLDTEGRNPAGECSLIDYFCRKHKVEIQHTEIPALDFGGNKMNYVPMELCILIKDQRCPKENLLNTDAGNVLRRMSLASAGERRSKICTIVKSEEGPCGGGVMDSFGMRVDTSMTKVTGRVIQPPELKIANPKGGIISMTLEVGKPQWNLKGGSMVEGKPLKCWGILYFADSKCQFKSEQFIKNLRKKCGLLGIRMEKPACSQEFPMSTLRRYDSLCELLQNIDDQVQKECEQRLQILLCVMADKDSGYKSLKLIAETKVGVVTQCCLRCHANDAKDHFLTNLAFKMNAKIGGSNVELMNRLPNFEGESHVMFIGADVNHPPSRDTNSPSIAAVVATVNWPAANRYATRVCAQGHRVEKILNFGRICLELVSYYNKVNKVWPEKIVIFRDGVSESQFNMVLTEELQDLKSVFGDSNHLPTITLIVAQKRHQTRFFVKGKSFNVLPGTVVDTEVVHPYEFDFYLFSHKGISGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRVYYEAMNEAKSDRSATTGSSSSSVSSALNDEGCYKLHPDVENLMFFI* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0557 992 Gene3D - 539 717 - -
Vra7g0557 992 MobiDBLite consensus disorder prediction 137 156 - -
Vra7g0557 992 SUPERFAMILY Ribonuclease H-like 639 950 IPR012337 -
Vra7g0557 992 SMART PAZ_2_a_3 357 489 IPR003100 GO:0005515
Vra7g0557 992 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 135 991 - -
Vra7g0557 992 Pfam Piwi domain 656 948 IPR003165 GO:0003676
Vra7g0557 992 SUPERFAMILY PAZ domain 352 510 IPR036085 GO:0005515
Vra7g0557 992 MobiDBLite consensus disorder prediction 1 156 - -
Vra7g0557 992 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 135 991 - -
Vra7g0557 992 CDD Piwi_ago-like 520 948 IPR045246 -
Vra7g0557 992 Pfam PAZ domain 365 481 IPR003100 GO:0005515
Vra7g0557 992 Gene3D paz domain 351 477 - -
Vra7g0557 992 Pfam Argonaute linker 1 domain 305 348 IPR014811 -
Vra7g0557 992 SMART Piwi_a_2 655 949 IPR003165 GO:0003676
Vra7g0557 992 CDD PAZ_argonaute_like 358 471 - -
Vra7g0557 992 Gene3D - 725 992 IPR036397 GO:0003676
Vra7g0557 992 ProSiteProfiles Piwi domain profile. 655 949 IPR003165 GO:0003676
Vra7g0557 992 MobiDBLite consensus disorder prediction 70 108 - -
Vra7g0557 992 ProSiteProfiles PAZ domain profile. 388 472 IPR003100 GO:0005515
Vra7g0557 992 Pfam N-terminal domain of argonaute 164 293 IPR032474 -
Vra7g0557 992 MobiDBLite consensus disorder prediction 109 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0557 Vra-Chr7 9351020 9354560 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0557 148 964 Eukaryotic Initiation Factors Gene Family AT1G48410 34.447 5.64e-138 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0557 K11593 - gmx:100805250 1151.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0557 7 9351020 9354560 Vra7g0178 7 2748855 2750511 PCT