Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0534 ATGCTAGGTGGGGATAGCAAAAGAAGCAGCAGACTTAGACAATCATCATGCTCATGTCCACCCAGAATGGTTAAAATTTCAGCTCAGCCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTTCTCTTCTACAGCACAGCTTAAAAGACACGATGTTTTCATCAGTTTTAGAGGTGAGGACACGCGCAACAGCTTCACAAGCCATCTCTATGCAGCCTTTCAGCACAAGAACATCCAAGCCTTCATAGATAACAGGCTTCAGAAAGGGGATGTGATCTCTCCCTCTATCTTTGAAGCCATCGAACACTCCAATGTTTCTCTTGTTGTTCTCTCCAAGTACTATGCTTCCTCCACCTGGTGCTTGCGTGAGCTCGCCAAAATACTTCAACTCAGGAAACGTGGAGGACACATTGTGATACCTGTTTTCTATAAGATTGACCCTTCCCATGTAAGGAAGCAGACAGGAACTTACGGAATGGCGTTTCAAAAATATAAAGAAGATGTCAAACAAAACATGGCCATGTTGCAGAAATGGAAAGCTGCTCTCACTGAAGTGGCAGATATAGTTGGGTGGGAATCAAAGAATTTTAGGACGGAGAATGAACTCATTCAGGAAATTGTCAAAGACGTTATGCAAAAACTCAACCATATGTATCCCACTGAAGTAAAAACACTTGTCGGAATTGATCAAAATCTTGCTCCTATTGAATCATTATTAAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGATTAGGTAAGACAACCATTGCGAGAGCTTTATTTGACAAATTATCATCTCAATTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGGAAGAACATGAAAAGCAAGGACTTGATTATTTGCGCAATAAACTTCTTTCTGAGATATTAGAAGATGTGAATCCCCATATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTACTTGATGATGTGGACGATCCAAAGAAACTCGAAGATCTTGTTGCACAACATGGTTGCTTGGGATCTGGGAGTAGGGTCATTGTCACCACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGACTGTCCCTTGATCATGCTGTTAGGCTTTTTAGTTTAAAGGCCTTCGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAGGCGGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTATGAGAAAATTCAAGAAGGTTCCTAATACTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAGAACATGTTCCTGGACATTGCATGCTTTTTCCGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGACATCTGTGGTTTCTATGCATATATTGGTATAAAAATCCTTCTAGAAAAAGGTCTTATAACTTTTTCTGATGATGGTGACGTCTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAATCTATCAAAGATCCTGGAAGGCGCAGCCGACTCTGGGATCTTAACGAAGTCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTGTGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGGGTAGAAAATGCAATTTGCACCTTCCTTCAGGTCTCCAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTCCTGACAACCTTGTTGTGCTTTCCATGATGGAAAGCCACGTTGAGAAACTTTGGGATGGAACCAAGTGTCTTCCAAGCTTGAAAGAGATGAACCTCCATGCCAGCAAAAAATTAACTAATCTCCCAGATTTATCTCAGGCACCAAATCTTGAAACTATAGATGTTTCTAATTGCACAAGTCTGCTTCATGTTCCTTTATCCATCCAATATGTCAAGAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTCAAGAGTCTTCCAAGAAACATTCACTTATCTTCTCTTGGGATGTTCATTCTCAGACGCTGTTCTAGTCTTGATGAGTTTTCATTGACTTCGGAGAACATGACACGCCTAGACTTGAGAGAAACAAAAATAGCAGATTTCCCAGAGTCTGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTTGAATCCTGCAACAAACTCAAGAGTCTTACAAGCAAGATTCACTTAAAATCTCTTCAAAGACTCAATCTGAGAGATTGTTCAATTCTCGAAGAGTTTTCTGTGACTTCGGAGAGCATGGAATACTTGAATTTGAGAGGCACATCAATAAGAGAATTGCCAACATCAGTTTGGCGCAATAACAAGCTTTATACTTTGGTTCTTCATTCCTGTAAAAAACTGGTGAATTTTCCTGAAAGACCAAAACTTGAGGATTTACCTCTCCTATCCTCCTCTGAAAGGCCAAATATGGATGAACTATGGACTTTGTCATCCTTAGCAGATTTGTCACTGAAAGGAAGCACGGTTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTAAAAAAACTTACCTTGACTGAGTGCAAGAAGCTGCGATCATTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTAATATTGTGTGCTTACCTGTAAGTATCAAAGATCTTTCCCATTTGAGAAAACTAGCCCTAATTAACCACAAGAAGCTTTTGACTCCACACGATCTTCCACCATCTTTGAAAGCTCCATTACTCAGTGAAAGTAAAGTTGATCCACACCTTGTGAGCATGAAAGGTCTTTCTCAACTACAGATGTTTCCTCAGGTTAAGTGGAAAATGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTAAGTTCATACCTGAAAGCATTAAAATTCTTTCACATATGAGGAAACTAGCCTTCACAAAGTGCACGAGGCTGCAGTATTTACCAGAGCTTCCGCCAAATTTGGAAGATTTGTTTGTAAGTGGATGTGACATTGAAAGCTTGCCAACAAGCATCAGAGATCTAGTTCACTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCAAGGCTCTACCAGAGCTTCCACAGTGCCTGCAATCATTGTGTGCAGCTGACTGCACATCACTTAAGATTGTTCGAAGTACAAAGAATATCTTAATAGAAGATAGGTATACATTCTATTGGAATTGCATAAACTTAGACCAAAAGTCACGCAACAACATCATTGCAGATGCACCCTTTGAGGCAGCCTTTACTTCTTTGAAAGAAAGAACACCTCTTGGTCCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCCACCAATCAACAAACTCTTCACTGGACATGGAAATTCCTCTTGAGTGGTTCGTTGACTCGATGTTCTTAGGTTTTGCTCTGTGCCTTGTAATTGGTAGTTTCCAACAGAACAGTTATGAAGGGTATGATCCAGATATCAATTGTTATCACTTTGTAAAATCTGCCTCCTACTCTGGCCCCAGTGTTCCCTTTCTTGGACATTGCACAACTGTAATGCAGGTCCCAAGAGGTTTTAATTCAGATCATATATTTATATGCTACTATCCCTCTTTTAATGCCTCCATATTACAAGATTTCAAGGATTTAAGCTTGTACTATGATGCCAATGACATAAGACTCAGAGTAATCTTTAAATTCAAGGGTCCATCTCAAAGGTTGGACATTGTTAAGAAGTGCGGGGTCAGACCTCTTTTGATCGCAAATACTGAAAGGCTTCGCATAGAAAGTGAACTGCAACCTGAATAG 4032 0.3971 MLGGDSKRSSRLRQSSCSCPPRMVKISAQPSSSSSSSSSFSSTAQLKRHDVFISFRGEDTRNSFTSHLYAAFQHKNIQAFIDNRLQKGDVISPSIFEAIEHSNVSLVVLSKYYASSTWCLRELAKILQLRKRGGHIVIPVFYKIDPSHVRKQTGTYGMAFQKYKEDVKQNMAMLQKWKAALTEVADIVGWESKNFRTENELIQEIVKDVMQKLNHMYPTEVKTLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIARALFDKLSSQFEASCFLANVMEEHEKQGLDYLRNKLLSEILEDVNPHISTSKVRSTFVMKRLRQKKVLIVLDDVDDPKKLEDLVAQHGCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDHAVRLFSLKAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNAMRKFKKVPNTEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLDICGFYAYIGIKILLEKGLITFSDDGDVCMHELIQEMGWEIVHQESIKDPGRRSRLWDLNEVYDVLKNNRGTEAVEGIILDVSQIRVLLLSCETFSRMINMRFLKFYMGKGRKCNLHLPSGLQSLPNKLMYLQWDGYPSKSLPSTFCPDNLVVLSMMESHVEKLWDGTKCLPSLKEMNLHASKKLTNLPDLSQAPNLETIDVSNCTSLLHVPLSIQYVKKLLLFNLESCKSLKSLPRNIHLSSLGMFILRRCSSLDEFSLTSENMTRLDLRETKIADFPESVWQHLNKLVYLNLESCNKLKSLTSKIHLKSLQRLNLRDCSILEEFSVTSESMEYLNLRGTSIRELPTSVWRNNKLYTLVLHSCKKLVNFPERPKLEDLPLLSSSERPNMDELWTLSSLADLSLKGSTVENLPASIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESNIVCLPVSIKDLSHLRKLALINHKKLLTPHDLPPSLKAPLLSESKVDPHLVSMKGLSQLQMFPQVKWKMFHSLPELPPFLEEFSLSESNIKFIPESIKILSHMRKLAFTKCTRLQYLPELPPNLEDLFVSGCDIESLPTSIRDLVHLRKITLIECKKLKALPELPQCLQSLCAADCTSLKIVRSTKNILIEDRYTFYWNCINLDQKSRNNIIADAPFEAAFTSLKERTPLGPLISICLPGTEIPDWFSHQSTNSSLDMEIPLEWFVDSMFLGFALCLVIGSFQQNSYEGYDPDINCYHFVKSASYSGPSVPFLGHCTTVMQVPRGFNSDHIFICYYPSFNASILQDFKDLSLYYDANDIRLRVIFKFKGPSQRLDIVKKCGVRPLLIANTERLRIESELQPE* 1344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0534 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 474 IPR027417 -
Vra7g0534 1343 SUPERFAMILY L domain-like 538 861 - -
Vra7g0534 1343 MobiDBLite consensus disorder prediction 8 41 - -
Vra7g0534 1343 PRINTS Disease resistance protein signature 247 262 - -
Vra7g0534 1343 PRINTS Disease resistance protein signature 323 337 - -
Vra7g0534 1343 PRINTS Disease resistance protein signature 415 429 - -
Vra7g0534 1343 PRINTS Disease resistance protein signature 907 923 - -
Vra7g0534 1343 Pfam Leucine Rich Repeat 640 659 IPR011713 -
Vra7g0534 1343 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42 791 IPR044974 GO:0006952
Vra7g0534 1343 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 775 952 IPR044974 GO:0006952
Vra7g0534 1343 SMART till_3 48 187 IPR000157 GO:0007165
Vra7g0534 1343 SUPERFAMILY "Winged helix" DNA-binding domain 450 557 IPR036390 -
Vra7g0534 1343 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 190 IPR035897 -
Vra7g0534 1343 Gene3D - 381 464 IPR042197 -
Vra7g0534 1343 Gene3D Ribonuclease Inhibitor 822 985 IPR032675 -
Vra7g0534 1343 Gene3D Ribonuclease Inhibitor 753 821 IPR032675 -
Vra7g0534 1343 Gene3D Ribonuclease Inhibitor 552 752 IPR032675 -
Vra7g0534 1343 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 42 791 - -
Vra7g0534 1343 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 775 952 - -
Vra7g0534 1343 ProSiteProfiles TIR domain profile. 47 213 IPR000157 GO:0007165
Vra7g0534 1343 Pfam C-JID domain 1179 1286 IPR045344 -
Vra7g0534 1343 Gene3D - 211 375 IPR027417 -
Vra7g0534 1343 Pfam TIR domain 49 224 IPR000157 GO:0007165
Vra7g0534 1343 Pfam NB-ARC domain 237 450 IPR002182 GO:0043531
Vra7g0534 1343 MobiDBLite consensus disorder prediction 1 41 - -
Vra7g0534 1343 SUPERFAMILY L domain-like 822 1120 - -
Vra7g0534 1343 Gene3D - 46 210 IPR035897 -
Vra7g0534 1343 Gene3D Ribonuclease Inhibitor 989 1130 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0534 Vra-Chr7 8979465 8985156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0534 40 840 WRKY Transcription Factor Family AT4G12020 36.186 2.18e-126 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0534 - - gmx:100797269 2157.49