Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0508 ATGGAGAACGTTCTCGGTCTTATCAAACTTCGTATCAAAAAAGGCTCTAATCTCAAAGCTTGCGACACTCGTACCAGTGACCCATATGTCTTTGTCACCATGGCCGAACAGCAACTGAGAACTAGTGTTGCAAAAGATACCTTAAATCCTGAGTGGAATGAAGAACTGACCCTTTATGTAAAAGATGTTAACATTCCAATACTTTTGACAGTTACAGACAAAGACACTTTCACGCCAGATGACAACATGGGTGATGCAGAAATAGACTTAAAGCCATATCTTCAGTGTGTGAAGATGGGGTTAAGAGATATGGCAGAAGGTCACATAGTGAAGCAGATTCAACCAGATAGGACTAACTGCCTTGCTGAAGGCAGCAACTGCATGTGGAAAAATGATAAACTCATCCAAGAGATGACTTTAAGATTGAGAAATGTCAAGCATGGGGAAATAACTGTGGAAATTGGGTGGGTTACTCTCCCAGATTCAAAAGGCTTATCACAAGTTCAGTTTTAG 513 0.4074 MENVLGLIKLRIKKGSNLKACDTRTSDPYVFVTMAEQQLRTSVAKDTLNPEWNEELTLYVKDVNIPILLTVTDKDTFTPDDNMGDAEIDLKPYLQCVKMGLRDMAEGHIVKQIQPDRTNCLAEGSNCMWKNDKLIQEMTLRLRNVKHGEITVEIGWVTLPDSKGLSQVQF* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0508 170 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 170 IPR044562 -
Vra7g0508 170 Gene3D C2 domain 3 168 IPR035892 -
Vra7g0508 170 Pfam C2 domain 7 92 IPR000008 -
Vra7g0508 170 SMART C2_3c 7 102 IPR000008 -
Vra7g0508 170 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Vra7g0508 170 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 91 IPR035892 -
Vra7g0508 170 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0508 Vra-Chr7 8561959 8563246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0508 38 167 C2H2 Transcription Factor Family AT1G70790 50.758 1.12e-41 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0508 - - pvu:PHAVU_002G096400g 306.219