Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0486 ATGGCGGTTTTACCAAGTGCCTCCTCCACCTTGGAATTGACTATATCTGTCCCTGGCTTTGCTTCTTCACCAACTCTTCTGCCTTCATCATCATCATCTGTGAAAGAATTGGACATAAACCAAGTACCTGTAGAAGAAGATTGGATGGCATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGACCCTCCCCGCAAGAAACTCCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACCCTAAACCCAAAGCAGAAAGATTGTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAAATGGAGTGTGAGTACCTGAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACAGAAGGCTTCAGAGGGAAGTAGAGGAACTGAGGGCCATGAAGGTGGGGCCACCCACCGTCATTTCTCCACACTCTTGTGAGCCACTACCAGCCTCCACATTAACCATGTGTCCCCGCTGTGAGCGCGTCACCACCACCGCCGACAAACTGCCTTCCGCCGCCGCCACTTTGTCCGCTAAAGTCCCACCGCACTCCCCTCAACCTTCTGCCGCCTGTTGA 645 0.5147 MAVLPSASSTLELTISVPGFASSPTLLPSSSSSVKELDINQVPVEEDWMASNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKDCLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTADKLPSAAATLSAKVPPHSPQPSAAC* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0486 214 Pfam Homeodomain 66 120 IPR001356 GO:0003677
Vra7g0486 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 196 - -
Vra7g0486 214 SUPERFAMILY Homeodomain-like 51 123 IPR009057 -
Vra7g0486 214 PANTHER - 1 196 - -
Vra7g0486 214 Gene3D - 58 128 - -
Vra7g0486 214 SMART HOX_1 64 126 IPR001356 GO:0003677
Vra7g0486 214 MobiDBLite consensus disorder prediction 20 39 - -
Vra7g0486 214 SMART halz 122 165 IPR003106 GO:0006355|GO:0043565
Vra7g0486 214 Coils Coil 135 155 - -
Vra7g0486 214 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Vra7g0486 214 CDD homeodomain 65 123 IPR001356 GO:0003677
Vra7g0486 214 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Vra7g0486 214 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Vra7g0486 214 MobiDBLite consensus disorder prediction 20 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0486 Vra-Chr7 8055855 8058344 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0486 34 196 Homeobox Transcription Factor Family AT1G70920 63.690 1.68e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra7g0486 Homeodomain 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0486 K09338 - gmx:100775341 390.193