Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0484 ATGGAAATATTAGAAAATGATAGTAGGATATTATGTGGTTCTCCTACGGTAGTTGAGGTTTTTCAAAAGGTATTTGCAGAGTTGATAGGATCATATTTATTAGTATTTGCTGGGTGTTGCTCTGTGGTTCTTAATAATTCAGAAAAGACAAAAGGCCAAATAACATTTCCTGGAGTTTGCATAGTGTGGGGTTTCACAGTAACGATCTTGGTTTATTCTCTTGGTCATGTCTCTGGTGCTCATCTCAATCCTGTAGTCACTTTCAGCTTAGCTATCTATCGTCGTTTCCCTTTCAAAATGGTGCCTTTGTATTTTATTTCGCAAATATTGGGATCTTTCTTAGCCAGTGGGACGTTGTATCTTTTGTTTGAAGTAGACGATAATTCTTATTTTGGAACAAGACCAGCAGGACCTGTAGTTCAATCTCTTGTTTTTGAGTTACTTGCAACATTTATCTTAATGTTCGTTATCTGTGCGGTTTCAACGGATAAAAGAGCGATTGGAAAATTAGGAGGGGTTGTTGTTGGTATGGCAGTTACAGTAGACGTCTTCATTGCTGGGCCTGTGTCAGGAGCTTCTATGAACCCAGCTAGAAGCCTTGGACCAGCTTTGGTGATGAACGTTTACACTGGATTTTGGGTTTATATAGTTGGACCGTTTGTTGGTGCCGTATTAGGTGCAACGTGTTATAACTTTATTAGAGAGACTGATTCTAACACCCTTTAG 726 0.3898 MEILENDSRILCGSPTVVEVFQKVFAELIGSYLLVFAGCCSVVLNNSEKTKGQITFPGVCIVWGFTVTILVYSLGHVSGAHLNPVVTFSLAIYRRFPFKMVPLYFISQILGSFLASGTLYLLFEVDDNSYFGTRPAGPVVQSLVFELLATFILMFVICAVSTDKRAIGKLGGVVVGMAVTVDVFIAGPVSGASMNPARSLGPALVMNVYTGFWVYIVGPFVGAVLGATCYNFIRETDSNTL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0484 241 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PRINTS Major intrinsic protein family signature 176 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PRINTS Major intrinsic protein family signature 213 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 Pfam Major intrinsic protein 18 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 SUPERFAMILY Aquaporin-like 19 237 IPR023271 -
Vra7g0484 241 PANTHER AQUAPORIN NIP2-1 6 238 IPR034294 -
Vra7g0484 241 TIGRFAM MIP: MIP family channel proteins 26 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 Gene3D Glycerol uptake facilitator protein. 3 240 IPR023271 -
Vra7g0484 241 CDD MIP 22 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra7g0484 241 PANTHER AQUAPORIN NIP4-1-RELATED 6 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0484 Vra-Chr7 8008217 8010169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0484 10 238 Major Intrinsic Protein MIP AT5G37810 55.022 1.21e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0484 K09874 - gmx:100819179 365.54