Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0478 ATGACTCTTTCGGATTCTAGCGTGGAAGAGATAAAGCGTGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGGTGGACAAAGATGCCTTCTTTGCTGGGAGAAGCCAAACACAAATTCCAGCAAATTCAAGAAGCCTATTCGGTGTTGTCGGACAGTAAGAAAAGAACTCTGTATGATGCGGGTTTGCATGATCCTGAAGAAGGAGAGGACGAGGGGTTTTCTGATTTTTTGGAAGAAATGTTGTCTCTCATGGCTGAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGCTAAAGGATTCGAGTGTCCTTCAATGTACTCTGTGATTGATGAGTCTCGATGCTTAAAGAAGACTCGTTTAGACACGAGCACGGTGGAGAATAAGGGGTCACATTTTCAACTACCTGATCTTAACCTCTATTGCAGTTAA 465 0.4301 MTLSDSSVEEIKRAYRKLAMQWHPDRWTKMPSLLGEAKHKFQQIQEAYSVLSDSKKRTLYDAGLHDPEEGEDEGFSDFLEEMLSLMAEARREKKHYDLKELQGMLMEIAKGFECPSMYSVIDESRCLKKTRLDTSTVENKGSHFQLPDLNLYCS* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0478 154 SUPERFAMILY Chaperone J-domain 6 70 IPR036869 -
Vra7g0478 154 SMART dnaj_3 3 56 IPR001623 -
Vra7g0478 154 Coils Coil 79 99 - -
Vra7g0478 154 Pfam DnaJ domain 5 61 IPR001623 -
Vra7g0478 154 ProSiteProfiles dnaJ domain profile. 1 64 IPR001623 -
Vra7g0478 154 PANTHER PUTATIVE, EXPRESSED-RELATED 4 146 - -
Vra7g0478 154 CDD DnaJ 5 53 IPR001623 -
Vra7g0478 154 PRINTS DnaJ domain signature 15 30 IPR001623 -
Vra7g0478 154 PRINTS DnaJ domain signature 36 56 IPR001623 -
Vra7g0478 154 PRINTS DnaJ domain signature 56 75 IPR001623 -
Vra7g0478 154 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 146 - -
Vra7g0478 154 ProSitePatterns Nt-dnaJ domain signature. 41 60 IPR018253 -
Vra7g0478 154 Gene3D DnaJ domain 3 104 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0478 Vra-Chr7 7872162 7873408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0478 5 62 C2H2 Transcription Factor Family AT1G74250 47.458 6.21e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0478 - - gmx:100306079 253.832