Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0468 ATGAGAAAACCTGCTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAAAAACTCATAGATTATATCAACAAACATGGTGAGGTTTGTTGGCGTACACTCCCTCAGGCTGCAGGTTTACTTCGGTGTGGCAAAAGTTGTAGACTGAGATGGATAAACTATCTAAGGCCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCGCTACTTGGCAACCGGTGGTCACTTATAGCAGGGAGATTGCCTGGTCGTACAGATAACGAAGTGAAGAACTATTGGAATTCTCATATAAAAAGAAAGCTAATTAGCAAAGGCATTGATCCAAATAATCATCGATTAGATCATAAAGTCCCTTTCCTTCAGAATCCACCCATGTCTGAAGATGCCTCAGAACCTTTTGGCACGAAAGTCGTTGAAAAGAACAGGCCATGTAAATCAACTCCTCATGTTTATGGTGATGTCTCAGATGATGCAAGTGGCGAGGCTCAGTCATCATATGCCCTTCCGGATTTAAACCTTGATCTCTCTATCGCCATTCCTTCAGAATCACAAAACAATCTAAAACCCTTTCGTCAATCTTATTCATCCAGGAAACTGCCTTATGATTCTCCTTCAACACTTCTTCTGTTTCAGTAA 678 0.41 MRKPASDIKDLNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLDHKVPFLQNPPMSEDASEPFGTKVVEKNRPCKSTPHVYGDVSDDASGEAQSSYALPDLNLDLSIAIPSESQNNLKPFRQSYSSRKLPYDSPSTLLLFQ* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0468 225 MobiDBLite consensus disorder prediction 154 176 - -
Vra7g0468 225 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vra7g0468 225 Gene3D - 5 66 - -
Vra7g0468 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Vra7g0468 225 CDD SANT 68 111 IPR001005 -
Vra7g0468 225 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Vra7g0468 225 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vra7g0468 225 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vra7g0468 225 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 200 - -
Vra7g0468 225 CDD SANT 15 60 IPR001005 -
Vra7g0468 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Vra7g0468 225 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Vra7g0468 225 Gene3D - 67 131 - -
Vra7g0468 225 SMART sant 12 62 IPR001005 -
Vra7g0468 225 SMART sant 65 113 IPR001005 -
Vra7g0468 225 PANTHER - 2 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0468 Vra-Chr7 7623740 7625168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0468 2 201 MYB Transcription Factor Family AT2G16720 54.634 1.23e-73 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g0468 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0468 K09422 - gmx:100814923 357.451