Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra7g0467 | ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCTGCTGCTGGAGGAAACCAGTTCGTGACGACATCGCTTTACGTCGGAGATCTCGACCCCAACGTGACGGACTCACAGCTTTATGATCTGTTCAGTCAATTGGGCCAAGTTGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCCGAAGATCGCTCGGTTACGGCTATGTCAACTATAGCAACCCTCAAGATGCTGCTAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAACAACAAGCCCATCCGTATTATGTATTCACATCGTGATCCCAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCATGCAAGGTAGCAACGGATTCATCTGGGCAATCAAAAGGATATGGCTTTGTTCAGTTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGAGTGCTATTGACAAGGCAAAATTCAATAATGTTTTTGTAAAGAATCTAGCAGATTCGACTAGTGATGATGAATTGAAGACAATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCACAGAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGATGATAGCATTAGTGATGATAAACTTAAGGAGATGTTCTCCCCTTTTGGTACCATCACCTCTTGCAAGGTTATGAGGGACCCAAATGGCGTTAGTCGTGGATCTGGATTTGTGGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCTCTGAGATGAATGGCAAAATGGTGGTAAGTAAACCTCTGTATGTGACTCTAGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCCCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGAGTGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCCGGATTTGGTTACCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCTGGTGGAAGGCGTGCAGTCCAGCAGTCGCAGCAGCCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGATATCCTCCTGGCAGGGGCATTCCTGATGTTCCTATGCCTGGGGTTGCTGGGGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCACTTCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTTGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCAAAGGTGGCTGAGGCGATGGATGTCCTAAGGAATGTTGCCCAGCAGCAGCAGGCTGGCAGTGCTGCTGATCAGCTGGCTTCTTTATCACTTAATGACAACCTTGTTTCTTAA | 1956 | 0.4678 | MAQVQVQPQNAMPGPNGAAAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFSQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLADSTSDDELKTIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKEMFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGSAADQLASLSLNDNLVS* | 652 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra7g0467 | 651 | PANTHER | POLYADENYLATE-BINDING PROTEIN | 21 | 634 | - | - | |
Vra7g0467 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 32 | 110 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | Gene3D | - | 548 | 631 | - | - | |
Vra7g0467 | 651 | MobiDBLite | consensus disorder prediction | 476 | 496 | - | - | |
Vra7g0467 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 394 | IPR035979 | GO:0003676 | |
Vra7g0467 | 651 | Gene3D | - | 121 | 193 | IPR012677 | - | |
Vra7g0467 | 651 | Gene3D | - | 295 | 400 | IPR012677 | - | |
Vra7g0467 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 314 | 391 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | CDD | RRM2_I_PABPs | 118 | 194 | IPR045305 | - | |
Vra7g0467 | 651 | Pfam | Poly-adenylate binding protein, unique domain | 560 | 624 | IPR002004 | GO:0003723 | |
Vra7g0467 | 651 | Gene3D | - | 1 | 120 | IPR012677 | - | |
Vra7g0467 | 651 | Gene3D | - | 196 | 294 | IPR012677 | - | |
Vra7g0467 | 651 | SUPERFAMILY | PABC (PABP) domain | 493 | 645 | IPR036053 | GO:0003723 | |
Vra7g0467 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 211 | 288 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | CDD | RRM1_I_PABPs | 33 | 112 | - | - | |
Vra7g0467 | 651 | SUPERFAMILY | RNA-binding domain, RBD | 32 | 201 | IPR035979 | GO:0003676 | |
Vra7g0467 | 651 | TIGRFAM | PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family | 33 | 625 | IPR006515 | GO:0003723 | |
Vra7g0467 | 651 | PANTHER | RNA BINDING PROTEIN | 21 | 634 | - | - | |
Vra7g0467 | 651 | CDD | RRM3_I_PABPs | 210 | 289 | - | - | |
Vra7g0467 | 651 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 120 | 192 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | SMART | rrm1_1 | 33 | 106 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | SMART | rrm1_1 | 121 | 193 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | SMART | rrm1_1 | 315 | 387 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | SMART | rrm1_1 | 212 | 284 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | SMART | rrm2_1 | 315 | 387 | IPR003954 | GO:0003676 | |
Vra7g0467 | 651 | SMART | rrm2_1 | 33 | 106 | IPR003954 | GO:0003676 | |
Vra7g0467 | 651 | SMART | rrm2_1 | 121 | 193 | IPR003954 | GO:0003676 | |
Vra7g0467 | 651 | SMART | rrm2_1 | 212 | 284 | IPR003954 | GO:0003676 | |
Vra7g0467 | 651 | CDD | RRM4_I_PABPs | 313 | 391 | - | - | |
Vra7g0467 | 651 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 552 | 629 | IPR002004 | GO:0003723 | |
Vra7g0467 | 651 | SMART | poly_2 | 564 | 627 | IPR002004 | GO:0003723 | |
Vra7g0467 | 651 | Coils | Coil | 286 | 310 | - | - | |
Vra7g0467 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 316 | 384 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 122 | 190 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 213 | 281 | IPR000504 | GO:0003723 | |
Vra7g0467 | 651 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 34 | 104 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra7g0467 | Vra-Chr7 | 7606798 | 7611842 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra7g0467 | 31 | 650 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 75.039 | 0.0 | 929 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra7g0467 | K13126 | - | gmx:100813735 | 1146.72 |