Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0467 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCTGCTGCTGGAGGAAACCAGTTCGTGACGACATCGCTTTACGTCGGAGATCTCGACCCCAACGTGACGGACTCACAGCTTTATGATCTGTTCAGTCAATTGGGCCAAGTTGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCCGAAGATCGCTCGGTTACGGCTATGTCAACTATAGCAACCCTCAAGATGCTGCTAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAACAACAAGCCCATCCGTATTATGTATTCACATCGTGATCCCAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCATGCAAGGTAGCAACGGATTCATCTGGGCAATCAAAAGGATATGGCTTTGTTCAGTTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGAGTGCTATTGACAAGGCAAAATTCAATAATGTTTTTGTAAAGAATCTAGCAGATTCGACTAGTGATGATGAATTGAAGACAATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCACAGAAGAAATCTGAAAGGGAGAATGAATTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGATGATAGCATTAGTGATGATAAACTTAAGGAGATGTTCTCCCCTTTTGGTACCATCACCTCTTGCAAGGTTATGAGGGACCCAAATGGCGTTAGTCGTGGATCTGGATTTGTGGCATTCTCAACTCCTGAGGAGGCATCTAGAGCACTCTCTGAGATGAATGGCAAAATGGTGGTAAGTAAACCTCTGTATGTGACTCTAGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCCCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGAGTGCCAATGTATCCTCCAGGTGGTCCAGGTATTGGTCAACAAATATTTTATGGCCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCCGGATTTGGTTACCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCTGGTGGAAGGCGTGCAGTCCAGCAGTCGCAGCAGCCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGATATCCTCCTGGCAGGGGCATTCCTGATGTTCCTATGCCTGGGGTTGCTGGGGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCACTTCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTTGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTCGAGTCACCAGAAGCGCTGAAAGCAAAGGTGGCTGAGGCGATGGATGTCCTAAGGAATGTTGCCCAGCAGCAGCAGGCTGGCAGTGCTGCTGATCAGCTGGCTTCTTTATCACTTAATGACAACCTTGTTTCTTAA 1956 0.4678 MAQVQVQPQNAMPGPNGAAAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFSQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLADSTSDDELKTIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKEMFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGSAADQLASLSLNDNLVS* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0467 651 PANTHER POLYADENYLATE-BINDING PROTEIN 21 634 - -
Vra7g0467 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Vra7g0467 651 Gene3D - 548 631 - -
Vra7g0467 651 MobiDBLite consensus disorder prediction 476 496 - -
Vra7g0467 651 SUPERFAMILY RNA-binding domain, RBD 211 394 IPR035979 GO:0003676
Vra7g0467 651 Gene3D - 121 193 IPR012677 -
Vra7g0467 651 Gene3D - 295 400 IPR012677 -
Vra7g0467 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 391 IPR000504 GO:0003723
Vra7g0467 651 CDD RRM2_I_PABPs 118 194 IPR045305 -
Vra7g0467 651 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
Vra7g0467 651 Gene3D - 1 120 IPR012677 -
Vra7g0467 651 Gene3D - 196 294 IPR012677 -
Vra7g0467 651 SUPERFAMILY PABC (PABP) domain 493 645 IPR036053 GO:0003723
Vra7g0467 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 288 IPR000504 GO:0003723
Vra7g0467 651 CDD RRM1_I_PABPs 33 112 - -
Vra7g0467 651 SUPERFAMILY RNA-binding domain, RBD 32 201 IPR035979 GO:0003676
Vra7g0467 651 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 33 625 IPR006515 GO:0003723
Vra7g0467 651 PANTHER RNA BINDING PROTEIN 21 634 - -
Vra7g0467 651 CDD RRM3_I_PABPs 210 289 - -
Vra7g0467 651 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 192 IPR000504 GO:0003723
Vra7g0467 651 SMART rrm1_1 33 106 IPR000504 GO:0003723
Vra7g0467 651 SMART rrm1_1 121 193 IPR000504 GO:0003723
Vra7g0467 651 SMART rrm1_1 315 387 IPR000504 GO:0003723
Vra7g0467 651 SMART rrm1_1 212 284 IPR000504 GO:0003723
Vra7g0467 651 SMART rrm2_1 315 387 IPR003954 GO:0003676
Vra7g0467 651 SMART rrm2_1 33 106 IPR003954 GO:0003676
Vra7g0467 651 SMART rrm2_1 121 193 IPR003954 GO:0003676
Vra7g0467 651 SMART rrm2_1 212 284 IPR003954 GO:0003676
Vra7g0467 651 CDD RRM4_I_PABPs 313 391 - -
Vra7g0467 651 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Vra7g0467 651 SMART poly_2 564 627 IPR002004 GO:0003723
Vra7g0467 651 Coils Coil 286 310 - -
Vra7g0467 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 384 IPR000504 GO:0003723
Vra7g0467 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 190 IPR000504 GO:0003723
Vra7g0467 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 281 IPR000504 GO:0003723
Vra7g0467 651 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0467 Vra-Chr7 7606798 7611842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0467 31 650 Eukaryotic Initiation Factors Gene Family AT1G49760 75.039 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0467 K13126 - gmx:100813735 1146.72