Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0452 ATGCAAGGTCAAAGGAGAAGTGTTGGATCGTTCCCAACAATTATTAGTATGAGGCAAGCGCCCAGTTCTCGTGGCACTGATACAAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATAGGGGATCTTTTGGTGAGACTGCATATTTATGTAGTACTAGTCAGGATGTTCAAAGCTTCAGTTGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAAGCAATGCGGAAGGTCTAAAATCAGAACATGGTTTGTCTTCTTCATATAATGCTACTAGTGAGGATGGTCTCGAGTATGAGGAAAGACAATTTGAACCAAATAGAGTAATTTTTCCTGTTAGCTCAAGTAATAACCTACATGGCAATCAATCTAGAGTTTATCCTCCCTTTTGTCAAGGCTCTAGTTCTAATCATATTACCCAACATATTAGTCTAGATATGGGGCATGTTGCCAATGCTTCTGACCGTGGGAAGGGAAAAGAAGCTAGTAGTAGTGTTGATGACTATAATAGTAATGGAATAGATAGAGAAAAGACATTATTTGGCAGTGCATCATGTAATTACATAGGACCTTCATCTGAAAACTCTGGATCCATGGCTTGGGTTGAAGGTGATAGTTCAAGTTCTCTAGTTGATTGGGGTCCTTCCTGCAAGAGAAAAGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCGCGCTTGCACAATCTGAAAATGATTATTGGCCTATTGGTCCTGCTGATCCTAATGCTTCTAGCAACTTAAGTGATGTTTCAACTTTGGAGGATATTCCTGTTACCAGTCCTCCATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGCTTCCAATGCATTTCCTTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTCTAAGAAACTTCAATAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGTGTTTTAGGCATCAAAATCATTCTTCGCTGAATCAAATACCTAGCTCTCAGTCATTTAATGATTCATTGGAATTGAGGTTAATAGCTGAAGTAACAACTGCTAATTCTGGTACTTCTTTAAACCAATCACCTGCCCAACGCATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGTGGGGTAGATCTTCATTTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGACTTTAATTTGAGAGTGTTTCCCAGAGATAGTACTGAGCACCCTTTGAATGCACCTGCATCTTCACAATACGAACCTACACGTTGGCATACACCTTCTGGTAATGTGAACTTTTCTGAAGGTGTACCTCGATCTTGGATTGGATCTAGTTCAAATGCCCACCCTTCACATAACTCTGGCTGGAATTTTAATCATGAAGTCCCAAATGAAAATGTGCAGAGTGTGTCAGAGTTCAATCTTTGGCCCCTTTTTCCATCAATTTGCTCTGCATCTGGTATTCATAATGGTCATTCTACTCCATCTTCTTCTGGCCCTCCCTCGTTTACCCAGGGTTCTGGCAACAATCAATCCTATTTAAGAACAACATTGTTAACGGAAAGAGGTGCTGAAGTTCTCTCTAGTCCCCATTCATTGCAAGCACTAACCTTCGGCAATGAGGGGAGACGACAACTACTATCCGAGATTCGCCAGGTCTTGATGGCAATTCGAAGGGGTGAGAACTTACGAGCTGAGGATGAATTTGGTGATGGAGAGAATGTTGGATCACTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAGTAGCCTTAGCTACTTGA 1896 0.4098 MQGQRRSVGSFPTIISMRQAPSSRGTDTNHQSSLNHVQNAVDSRFSDYRGSFGETAYLCSTSQDVQSFSCWNLGESSSRLNLTNQSNAEGLKSEHGLSSSYNATSEDGLEYEERQFEPNRVIFPVSSSNNLHGNQSRVYPPFCQGSSSNHITQHISLDMGHVANASDRGKGKEASSSVDDYNSNGIDREKTLFGSASCNYIGPSSENSGSMAWVEGDSSSSLVDWGPSCKRKALEGSSRQLCSGGSSSALAQSENDYWPIGPADPNASSNLSDVSTLEDIPVTSPPLLQNVRNEVRQKASNAFPLISIAENLERPLRNFNRRMSQLQDQESIHVNLPSIGCFRHQNHSSLNQIPSSQSFNDSLELRLIAEVTTANSGTSLNQSPAQRIHSFPLSRIANPRWGRSSFSYNSGDRVIREDFNLRVFPRDSTEHPLNAPASSQYEPTRWHTPSGNVNFSEGVPRSWIGSSSNAHPSHNSGWNFNHEVPNENVQSVSEFNLWPLFPSICSASGIHNGHSTPSSSGPPSFTQGSGNNQSYLRTTLLTERGAEVLSSPHSLQALTFGNEGRRQLLSEIRQVLMAIRRGENLRAEDEFGDGENVGSLDCGHEFHSACIKQWLMQKNICPICKVVALAT* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0452 631 MobiDBLite consensus disorder prediction 429 452 - -
Vra7g0452 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 587 629 IPR013083 -
Vra7g0452 631 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 578 IPR045191 GO:0061630
Vra7g0452 631 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 588 631 IPR045191 GO:0061630
Vra7g0452 631 MobiDBLite consensus disorder prediction 512 532 - -
Vra7g0452 631 CDD RING-H2_PA-TM-RING 589 625 - -
Vra7g0452 631 MobiDBLite consensus disorder prediction 432 452 - -
Vra7g0452 631 SUPERFAMILY RING/U-box 589 627 - -
Vra7g0452 631 MobiDBLite consensus disorder prediction 164 186 - -
Vra7g0452 631 Pfam RING-H2 zinc finger domain 601 625 IPR024766 GO:0008270
Vra7g0452 631 Coils Coil 309 329 - -
Vra7g0452 631 MobiDBLite consensus disorder prediction 1 32 - -
Vra7g0452 631 ProSiteProfiles Zinc finger RING-type profile. 600 625 IPR001841 -
Vra7g0452 631 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 2 578 - -
Vra7g0452 631 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 588 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0452 Vra-Chr7 7370649 7379984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0452 588 631 C3H Transcription Factor Family AT2G15530 61.364 2.34e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0452 - K19041 gmx:100809024 858.596