Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0451 ATGCTCATCATGTCAGAAGATCAAAGTTTGCATGATACGACGAAGTTATTGTGGGAAAACACGAATTCAGAAAAGCAGAAGAACGAAAAGGTGGAAGGTGTGATGAATAAGAAGCGAAATCGAGAGCTGAATAAAATTAGCAGTGCAGAAGGAAATGGTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAAAAAATGAAAAACATGTTCGCTAGTCTTCATGCATTGCTTCCTCATCTTCCTTCTAAGGCGGATAAATCAACGGTCGTGGATGAAGCAGTGAGCTACATCAAAAATCTTGAGAGAACCCTGGAAAACCTTCAGAAACAGAAAGAAGAAAAGGTCCGATGTGGCTATGAGTCATCACCGTCCATGTTCACTGCTCAAGGACTTTCTTCTAATTACGACTTTTCCAACGCGATTATGGGAACTTCTTCAAACGCACTTTTATTCCCTGCGCAGCAGCAGCAGCAGCCGCCCGTAGCTTTTGATAAAACATGGGCCTCTTCAAATATGGTCTTGAATGTTTGTGGAGATGAGGCCCAATTCTGCATTTGCGCGGCCCATAAACCAGGTCTCGTGTCCACCATAGTTTTTGTGCTTGATAAATACAAGATAGAGCTTGTATATGCCCACATTTCGTGCATTGGGAATGGAAATGCAATCATGATTCAAGCTCACGGAAAACGAGCTTCACATCAGTTCCTGGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCGGGAGAGATTCTGCTATGGATCGCTTAA 783 0.4253 MLIMSEDQSLHDTTKLLWENTNSEKQKNEKVEGVMNKKRNRELNKISSAEGNGDHEMHIWTERERRKKMKNMFASLHALLPHLPSKADKSTVVDEAVSYIKNLERTLENLQKQKEEKVRCGYESSPSMFTAQGLSSNYDFSNAIMGTSSNALLFPAQQQQQPPVAFDKTWASSNMVLNVCGDEAQFCICAAHKPGLVSTIVFVLDKYKIELVYAHISCIGNGNAIMIQAHGKRASHQFLDANSVEEIYRQAAGEILLWIA* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0451 260 SMART finulus 61 109 IPR011598 GO:0046983
Vra7g0451 260 PANTHER - 22 258 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vra7g0451 260 CDD bHLH_AtbHLH_like 58 111 IPR045239 -
Vra7g0451 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 115 IPR036638 GO:0046983
Vra7g0451 260 Pfam Helix-loop-helix DNA-binding domain 58 104 IPR011598 GO:0046983
Vra7g0451 260 PANTHER TRANSCRIPTION FACTOR BHLH95 22 258 - -
Vra7g0451 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Vra7g0451 260 Coils Coil 93 120 - -
Vra7g0451 260 CDD ACT_UUR-ACR-like 188 221 - -
Vra7g0451 260 Gene3D - 44 119 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0451 Vra-Chr7 7356129 7357295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0451 37 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.255 2.72e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0451 HLH 2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0451 - - gmx:102665879 338.576