Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0450 ATGTCGAATGAAGATGTTGCTGATGAAAATGAGAAGAAAATTATTACTAGTGGTGAAGAATCCTACGATCCCGAAACTAATAATGAAATGCATCTATCCATCGAAAGAGGCCGAAGAAAGAAAATGAAAGAAATGTTCGACGATCTTGGTGCTTTACTTCCTCAACTTCCTTCAAAGGCTGATAAAGCAACCATAGTGAACGAAGCAGTGGACTACATAAAAGTTCTGCAGGAAACTCTGGAAAAGCTAGAGAGAAAGAAAGAAGAAAGGGCAAAACATATTCTGAAACAAATTATGGGAACGAGTTCAGAGTCTGAGAAGCAGAAAGGTTTTGATAAAACTTGGGCTGCTTCAAACATGGTCCTCAACATTCGTGGAAATGAAGCTCAATTCTCGATTTGCTCAGTGCATAAGCCAGGACTCATGACCATGATTGCTTCTGTTCTTGAAAAGCACAACATAGAACTCATTTCTGCAACCATTTCTGCTAATGGAAATGGAAGTACATGCATGATTCAAGTCCATGGAAAACAAGCTTGGGAGGCAAATTCAATGGAGGAAACTTACAGAAAAGCTGCTGAAGAAATTATGCCATGGATCTCTTAA 606 0.3894 MSNEDVADENEKKIITSGEESYDPETNNEMHLSIERGRRKKMKEMFDDLGALLPQLPSKADKATIVNEAVDYIKVLQETLEKLERKKEERAKHILKQIMGTSSESEKQKGFDKTWAASNMVLNIRGNEAQFSICSVHKPGLMTMIASVLEKHNIELISATISANGNGSTCMIQVHGKQAWEANSMEETYRKAAEEIMPWIS* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0450 201 PANTHER TRANSCRIPTION FACTOR BHLH95 10 199 - -
Vra7g0450 201 MobiDBLite consensus disorder prediction 1 30 - -
Vra7g0450 201 CDD bHLH_AtbHLH_like 31 84 IPR045239 -
Vra7g0450 201 Pfam Helix-loop-helix DNA-binding domain 30 77 IPR011598 GO:0046983
Vra7g0450 201 PANTHER - 10 199 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vra7g0450 201 Gene3D - 18 93 IPR036638 GO:0046983
Vra7g0450 201 Coils Coil 66 96 - -
Vra7g0450 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 26 76 IPR011598 GO:0046983
Vra7g0450 201 SMART finulus 32 82 IPR011598 GO:0046983
Vra7g0450 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 27 98 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0450 Vra-Chr7 7347005 7352047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0450 19 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.245 2.08e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0450 HLH 4.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0450 - - vra:106766004 386.726