Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0449 ATGCCTGCAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGTCCAATCTCGCTCGAACTCATGAGAGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGGCCCAGCATCGAGTCCTGGGTTACCGCCGGTAACACCACCTGCCCCGTTACACGTGCCACTCTCACTGACTTCACCCTAATCCCCAACCACACTCTCCGCCGCCTTATCCAGGAGTGGTGCGTCGCTAACCGCGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCCGCCCTCGTTCGTTCCCTTCTCAACCAAATATCCTCTGATTCCGCTCCAAATCACCTTCGTCTCTCCTCTCTCCGACGACTCAGACAACTCGCTCGCGACTCCGACAAGGACCGCTCTCTCATTTCCTCTCAAAACGTCCGCCAGATCCTTCTCCCTATCACTTTCAACGCTGTCGACGAGTTCAAGCACGAGGCGCTCGCGCTACTCGTTTTGTTCCCGCTCGCCGAGTCCGAATGCGCCGCTCTCGCATCCGACTCCGACAAGGTTACTTATCTCTCACGGTTGCTCTCGCATAGCTCGCTTGAAGTCCGAGTCAACTCGGCTGCGTTGATTGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGCGCGCAGGTGAGCGATGTTGACGAAATCTATGACGGAGTCGTGGACCTGCTCCGCTGCCCGATCTCGTACCCCCGCGCTCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCTTGGTGAAGCAGACTCGGCACAAGGCGGTGGCCGCTGGTGCGCCGGCGGTACTCGTCGATAGGCTCGCGGACTTCGAGAAATGTGACGCGGAGAGGGCCCTCGCCACGGTGGAGCTCCTCTGCAGGATTCCCGCTGGATGCGCCGCGTTCGCTGGCCACGCACTGACTGTGCCGATGCTGGTGAAAATAATACTAAAAATATCGGACCGCGCGACGGAGTACGCGGCCGGAGCGTTGCTGTCGTTATGCTCCGAATCGGAGCGGTGCCAGCGAGAGGCGGTGACGGCTGGGGTGTTGACCCAGCTTCTGCTTCTGGTGCAGAGCGATTGTACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAGGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTCTGA 1242 0.591 MPASLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVTAGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQISSDSAPNHLRLSSLRRLRQLARDSDKDRSLISSQNVRQILLPITFNAVDEFKHEALALLVLFPLAESECAALASDSDKVTYLSRLLSHSSLEVRVNSAALIEIVVAGTHSPELRAQVSDVDEIYDGVVDLLRCPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0449 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Vra7g0449 413 Gene3D - 92 401 IPR011989 -
Vra7g0449 413 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 409 - -
Vra7g0449 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Vra7g0449 413 CDD RING-Ubox_PUB 18 59 IPR045210 -
Vra7g0449 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Vra7g0449 413 PANTHER WDSAM1 PROTEIN 4 409 IPR045185 GO:0061630
Vra7g0449 413 SUPERFAMILY RING/U-box 12 90 - -
Vra7g0449 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Vra7g0449 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0449 Vra-Chr7 7342739 7344594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0449 1 413 U-box Gene Family AT1G49780 65.485 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0449 - - var:108341190 776.548