LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g0449	ATGCCTGCAAGTTTAGAACCCTTGGATTTGGGGGTTCACATACCCTACCACTTCAGATGTCCAATCTCGCTCGAACTCATGAGAGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGGCCCAGCATCGAGTCCTGGGTTACCGCCGGTAACACCACCTGCCCCGTTACACGTGCCACTCTCACTGACTTCACCCTAATCCCCAACCACACTCTCCGCCGCCTTATCCAGGAGTGGTGCGTCGCTAACCGCGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCCGCCCTCGTTCGTTCCCTTCTCAACCAAATATCCTCTGATTCCGCTCCAAATCACCTTCGTCTCTCCTCTCTCCGACGACTCAGACAACTCGCTCGCGACTCCGACAAGGACCGCTCTCTCATTTCCTCTCAAAACGTCCGCCAGATCCTTCTCCCTATCACTTTCAACGCTGTCGACGAGTTCAAGCACGAGGCGCTCGCGCTACTCGTTTTGTTCCCGCTCGCCGAGTCCGAATGCGCCGCTCTCGCATCCGACTCCGACAAGGTTACTTATCTCTCACGGTTGCTCTCGCATAGCTCGCTTGAAGTCCGAGTCAACTCGGCTGCGTTGATTGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGCGCGCAGGTGAGCGATGTTGACGAAATCTATGACGGAGTCGTGGACCTGCTCCGCTGCCCGATCTCGTACCCCCGCGCTCTCAAGATCGGGATCAAGGCCTTGTTCGCGCTGTGCTTGGTGAAGCAGACTCGGCACAAGGCGGTGGCCGCTGGTGCGCCGGCGGTACTCGTCGATAGGCTCGCGGACTTCGAGAAATGTGACGCGGAGAGGGCCCTCGCCACGGTGGAGCTCCTCTGCAGGATTCCCGCTGGATGCGCCGCGTTCGCTGGCCACGCACTGACTGTGCCGATGCTGGTGAAAATAATACTAAAAATATCGGACCGCGCGACGGAGTACGCGGCCGGAGCGTTGCTGTCGTTATGCTCCGAATCGGAGCGGTGCCAGCGAGAGGCGGTGACGGCTGGGGTGTTGACCCAGCTTCTGCTTCTGGTGCAGAGCGATTGTACGGAGAGAGCCAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAGGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTCTGA	1242	0.591	MPASLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVTAGNTTCPVTRATLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQISSDSAPNHLRLSSLRRLRQLARDSDKDRSLISSQNVRQILLPITFNAVDEFKHEALALLVLFPLAESECAALASDSDKVTYLSRLLSHSSLEVRVNSAALIEIVVAGTHSPELRAQVSDVDEIYDGVVDLLRCPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF*	414

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g0449	413	SUPERFAMILY	ARM repeat	103	389	IPR016024	-
	Vra7g0449	413	Gene3D	-	92	401	IPR011989	-
	Vra7g0449	413	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	4	409	-	-
	Vra7g0449	413	Pfam	U-box domain	14	85	IPR003613	GO:0004842\|GO:0016567
	Vra7g0449	413	CDD	RING-Ubox_PUB	18	59	IPR045210	-
	Vra7g0449	413	ProSiteProfiles	U-box domain profile.	13	87	IPR003613	GO:0004842\|GO:0016567
	Vra7g0449	413	PANTHER	WDSAM1 PROTEIN	4	409	IPR045185	GO:0061630
	Vra7g0449	413	SUPERFAMILY	RING/U-box	12	90	-	-
	Vra7g0449	413	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	13	87	IPR013083	-
	Vra7g0449	413	SMART	Ubox_2	17	80	IPR003613	GO:0004842\|GO:0016567

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g0449	Vra-Chr7	7342739	7344594	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g0449	1	413	U-box Gene Family	AT1G49780	65.485	0.0	536

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g0449	-		-	var:108341190	776.548

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