Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0446 ATGCTCTACGGGCTTCTCCCTTTGTTGGGAATGTTGGCTTTTCTTGGAATGCAGCTTCCTGTCATAATGGCTGATTGCCCTTTGAATTTTACTGGTTCAAACTTCACACTTACATCCTCTCTATGCTCTACCCATGGTGACAGAGGAAAATGCTGCCGATACATCAATACTAATGTTGCAATTGCTGTTTCTCGTTTTGCTAATGCAACAGGCAACCTAGGGGTCTCTCAAAATGCGACTGACATCTGCCTCCAAACCATATTCCAAACCTTGCAACTTAATGGAGTTGCACAAAATGCAACAGCTTTCTGTGGTTTCGGAACAAAAATTCCTGTTAATTATGAATGCAAGGGCAGAACTAGTGTTGTTCAAATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCGCCACTTGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCTGGCATTGGTTATCTCCATCATATCGGAATTGAAGATAATATAACACTAAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCAAGCCAAGTTGATGAGATATCTACTATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAAGCTTCCTGTTTTAGAGTCAACCCCATCCTTGCCTGCTCCTATGGCTTCTCCAAGCCCACCTGTCTCTGATGGCCCAAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCATCATTCATATCGTTTGACGTTAGTTCCAGGTATTGCTATTGCCGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACAAGCCTGATAATTTTGGTAAACCCTGTTCGAAAACCTTACCTCCTTGTACAACATGGAAATTTCAGGAAGGTTCTTCATCCATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGTACTATCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTAAAACGGATGAACAGAATCTCTGAGCAGGGAGAGGATGAGTTCTGCAGAGAAATTGAGCTTCTTGCCCGGCTGCACCATCGGCATCTTGTTGCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTGGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGTCTTGCACAAGCTTCAAAAGATGGATCGGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGATCCTGAGTATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTATTACTACTTGAAATTGTAACAGGAAGACGGGCCATTCAAGATAATAAGAATCTAGTAGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTAAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGCACCCATAGAGAAGGAAGGGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCACAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTCACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCGAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 2016 0.4241 MLYGLLPLLGMLAFLGMQLPVIMADCPLNFTGSNFTLTSSLCSTHGDRGKCCRYINTNVAIAVSRFANATGNLGVSQNATDICLQTIFQTLQLNGVAQNATAFCGFGTKIPVNYECKGRTSVVQMLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLKLPVLESTPSLPAPMASPSPPVSDGPSQPLLSAPLKGKHHSYRLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDKPDNFGKPCSKTLPPCTTWKFQEGSSSMFRKFSYKEIKRATEDFSTIIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVALRGFCIQKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEALFHSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0446 671 SMART serkin_6 323 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0446 671 PANTHER BNAC06G02630D PROTEIN 7 671 - -
Vra7g0446 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vra7g0446 671 ProSiteProfiles Protein kinase domain profile. 323 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0446 671 CDD STKc_IRAK 329 591 - -
Vra7g0446 671 Gene3D Transferase(Phosphotransferase) domain 1 399 615 - -
Vra7g0446 671 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Vra7g0446 671 Pfam SPARK 25 162 IPR043891 -
Vra7g0446 671 PANTHER OS01G0750732 PROTEIN 7 671 - -
Vra7g0446 671 Gene3D Phosphorylase Kinase; domain 1 297 398 - -
Vra7g0446 671 Pfam Protein kinase domain 327 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0446 671 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0446 Vra-Chr7 7280892 7287246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0446 24 670 Receptor kinase-like Gene Family AT3G19300 59.601 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Vra7g0446 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0446 - - gmx:100807955 1207.2