Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0426 ATGGGAGTTTGCACATCGAAGCCGCAGAAGGCGAACCCTTACGCGCTTCGCGAAGCGGAAGCCGAAGCCGACCCTTCGCAAATCCCGAAAGCCCCACTTAGTCCCGCCGCAGCCGAGAACCACCGCCGGAAAGATGACGTTGCCGCCGGGAAACAGTCTCCGTTCTTCCCGTTCTACAGCCCGAGCCCCGCGCGCTTCCTGAAGAAGTCTCCAGCGCCGGCGGGAGGGAGCAGGAGCGCGGCCTCCACACCGAGGAGGTTCTTCCGGAGGCCGTTCCCTCCGCCGTCGCCGGCTAAGCACATAAGGGCTGTGCTGGCGCGGCGACAGGGAAAGAAGGCGGCGGCAGCTGCGATATCGGAGGAGGGGGAGGATGGCGGTGGAGCTGCGGCGGATTTGGATAAGAGGTTTGGATTCTCCAAGGAGTTCACGAGTAGGTTGGAAGTTGGTGAAGAAGTGGGTCGAGGGCATTTTGGGTATACTTGTTCTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTTAAGGTCATACCAAAATCAAAGATGACAACAGCAATTGCTATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGACACAGCAATTTGATACAGTTCTATGATGCGTTTGAAGACCAAGATAATGTGTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTCTTAGATATGATATTATCAAGGGGAGGGAAATACTCAGAAGATGATGCAAAGGCTGTAATGGTGCAGATTCTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTTGTGCACCGAGACCTTAAGCCAGAGAATTTTTTGTACACTAAAAAGGATGAAAGTTCTGAGTTGAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGATATTGTTGGAAGTGCATATTATGTGGCCCCTGAAGTTCTCCATAGATCTTACAGCACAGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTTTTATGTGGTAGTCGTCCATTTTGGGCTCGAACGGAGTCTGGTATTTTCAGGGCAGTCCTGAAAGCTGATCCTAGCTTTGACGAAACACCGTGGCCATCTTTATCTTCAGAAGCAAAGGATTTTGTCAAACGCTTACTGAATAAGGACCCACGGAAGCGGATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATACGAAATTACAACAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGACATATATGAGATCATCATCCTTACGCAAGGCTGCCTTAAGGGCCTTGTCAAAGACACTGACTGCAGATGAACTCTATTATCTGAGGGAGCAATTTTCGCTGCTAGAACCAAGCAAAAATGGCAGCATATCTTTAGAGAATGTTAACAAGGCCTTGATGAAATATGCAACAGATGCCATGAAAGAGTCTCGCATCCCTGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTCTGTGCAGCTGCGTTAAGTGTGCATCAACTTGAAGCTCTTGATCGTTGGGAACAACATGCTCGTTGTGCCTATGAGCTTTTTGATAAAGATGGAAACAGGGCTATTGTCATTGAAGAGCTTGCTTCATGTACTTTACATTCTACGAATCCTCGTATCGTTGAAGGAACTATAATTAGGAAGCTGCTGCTGCTGAGCGATACCAATTGTTTGGAAAGAGTGAAAAATGTTAACCATGATGCACATTCCCATAAGCGTGGTCTTAATCGTAGCCCAGTCTATCAATTTTTATTCAGTTTTCAATATTTTGCTATGGTAATTTGTGTTACTTGTCGTTTTTACATTCACATGTATGTATGTAGTTACTCGCTTCTAGAAAACAGGTGTTGGTTGTATTATGGCGTAACACGTTCGCGTAATGAGGACATATACTAA 1968 0.4548 MGVCTSKPQKANPYALREAEAEADPSQIPKAPLSPAAAENHRRKDDVAAGKQSPFFPFYSPSPARFLKKSPAPAGGSRSAASTPRRFFRRPFPPPSPAKHIRAVLARRQGKKAAAAAISEEGEDGGGAAADLDKRFGFSKEFTSRLEVGEEVGRGHFGYTCSARFKKGELKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALNGHSNLIQFYDAFEDQDNVYIVMELCEGGELLDMILSRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPENFLYTKKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDETPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNNVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFSLLEPSKNGSISLENVNKALMKYATDAMKESRIPDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFDKDGNRAIVIEELASCTLHSTNPRIVEGTIIRKLLLLSDTNCLERVKNVNHDAHSHKRGLNRSPVYQFLFSFQYFAMVICVTCRFYIHMYVCSYSLLENRCWLYYGVTRSRNEDIY* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0426 655 Gene3D Transferase(Phosphotransferase) domain 1 235 420 - -
Vra7g0426 655 CDD STKc_CAMK 147 407 - -
Vra7g0426 655 PANTHER CDPK-RELATED KINASE 2 41 554 - -
Vra7g0426 655 Pfam Protein kinase domain 147 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0426 655 Gene3D - 448 517 - -
Vra7g0426 655 SUPERFAMILY Protein kinase-like (PK-like) 142 450 IPR011009 -
Vra7g0426 655 SMART serkin_6 146 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0426 655 ProSiteProfiles Protein kinase domain profile. 146 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0426 655 PANTHER SERINE/THREONINE-PROTEIN KINASE 41 554 - -
Vra7g0426 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Vra7g0426 655 ProSitePatterns Protein kinases ATP-binding region signature. 152 178 IPR017441 GO:0005524
Vra7g0426 655 Gene3D Phosphorylase Kinase; domain 1 148 234 - -
Vra7g0426 655 MobiDBLite consensus disorder prediction 1 94 - -
Vra7g0426 655 SUPERFAMILY EF-hand 439 555 IPR011992 -
Vra7g0426 655 Gene3D - 426 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0426 Vra-Chr7 6849867 6855096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0426 1 554 EF-hand Containing Proteins AT3G50530 70.270 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra7g0426 Pkinase 2.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0426 - K00924 gmx:100798913 979.548