Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0416 ATGCGGTGTCATGGCTTAACCGTACACGGAAGCAACCACCGTGGCTTCTGCGTCCCCACCGTGTCTCCGGTGTTCTTGAGACCCACCCGACCCGTCACCCGTATCGCGTTTCCCAAGGCTTCCCTGAAGAACGAGGGACTAGTGATGGAGTTGAGCTTCTACGAGCTTCTGGGTATACCCGAATCCGGTTCCTTGATGGAGATCAAGAACGCGTACAAGCAACTCGCCCGAAAGTACCACCCGGATGTGTCTCCTCCGGGTCGGGTGGAGGAGTACACCAAACGGTTTATTCAGGTGCAGGAAGCCTACGAAACTCTCTCCGATCCTTCCCGACGAGCCATGTACGATCACGACATGGCTAAAGGTATTAACTTCGCTTTCAACGCCCGCAGACGCCGCAATTACCACGATCAGGTGGTGGAGCAAAAAAGTGAATGGAAATCTCGGTGGCAATCTCAACTGTCGGAGCTGAAGAGAAGAAGTAGCAGCAAGGAGGGTGGAGGGAATATGTCATGGGGAGCGAGAATGCGCCAGCAGAGGGATGAATTGGCTAATGAATCATGA 564 0.539 MRCHGLTVHGSNHRGFCVPTVSPVFLRPTRPVTRIAFPKASLKNEGLVMELSFYELLGIPESGSLMEIKNAYKQLARKYHPDVSPPGRVEEYTKRFIQVQEAYETLSDPSRRAMYDHDMAKGINFAFNARRRRNYHDQVVEQKSEWKSRWQSQLSELKRRSSSKEGGGNMSWGARMRQQRDELANES* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0416 187 ProSiteProfiles dnaJ domain profile. 52 119 IPR001623 -
Vra7g0416 187 ProSitePatterns Nt-dnaJ domain signature. 96 115 IPR018253 -
Vra7g0416 187 SUPERFAMILY Chaperone J-domain 51 123 IPR036869 -
Vra7g0416 187 PRINTS DnaJ domain signature 54 72 IPR001623 -
Vra7g0416 187 PRINTS DnaJ domain signature 72 87 IPR001623 -
Vra7g0416 187 PRINTS DnaJ domain signature 91 111 IPR001623 -
Vra7g0416 187 Pfam DnaJ domain 53 116 IPR001623 -
Vra7g0416 187 CDD DnaJ 53 108 IPR001623 -
Vra7g0416 187 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 48 183 - -
Vra7g0416 187 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 48 183 - -
Vra7g0416 187 Gene3D DnaJ domain 39 160 IPR036869 -
Vra7g0416 187 MobiDBLite consensus disorder prediction 145 187 - -
Vra7g0416 187 SMART dnaj_3 51 111 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0416 Vra-Chr7 6632505 6635037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0416 54 116 C2H2 Transcription Factor Family AT1G74250 45.455 9.05e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0416 - - gmx:100101903 316.62