Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0406 ATGGACTTCTCGAAGAAGCGCAAGACCGAAGAGAACGGCGATGCTGATTCTCTGTCGTCACCACCCTCCCAAGCATTCCCCCCCGCCACCGTCCCCACAACCGCCCCCCTGGCAGCGGAAGACATCCGCAAGATCTTGCGTCCGTTTTCCCAGGAACAGCTCCTCGACCTCCTCCAATCAGCGTCTCTACGCCACTCTGATGTCCTCGACGCCGTGCGCGCCGTCGCGGACCGCGACTCTACTCTCCGTAAGCTTTTCGTTCGCGGACTTGCCGGCGAAACCACCAGCGAGACCCTGCGCAGCGTGTTCTCCACGTTCGGCGAACTCGACGAGGCCATCGTGATCTTCGACAAGGCCACAGGACGCTCCAAGGGCTATGGCTTTGTGGTCTTTCGCCACGTGGATGGCGCCATACTCGCGCTGAAGGATCCCAGCAAGAAGATCGATGGCCGCATGACGGTAACGCAACTCGCCGCAGCTGGTGGACCTGGGGGCTCCGGCGACGTATCAGCGAGGAAGGTTTTCGTCGGGAACGTGCCGTTTGAGATTTCCTCGGATAAACTACTGAGCGAATTCCTCAAGTTCGGAGAGGTCGAGGAAGGACCTCTAGGGTTTGACAAATCGAGCGGCAAATCGAGGGGTTTCGCTTTTTTCGTTTATAAGACGGAGGAAGGTGCGAGGGCTTCGTTGGTGGAACCTGTTAAGACCATTGATGGGCATCAAGTGATTTGCAAATTGGCTGTGGATAGCAAAAAGACGAAACCCTTTGGAGGTGATCAACATCAGCATCAACACACGCAACACACGCAGCATCAGCAGCAACAACAGCAACATCCGCAGCAACAGATGCAACAACAAGGTCCTATGATGATACCTCAGTATGGTGGATATGGTGGGAATGGCTATGGAATACAGCACTCGGTGCCACCGTATAACAATCCGGTTCAGGTTTCTGGTGGTGGTGGGTATGGGCACGGAATAGGTGGTGGATATGGTAATTCGCAGATGGGTGGACCGGTTTCCGGTGACTACGGAACTAGACTGCCTCCCAATTCTGGTGGGGGGTTCCCTGAAGGCTCCCAGTATGGCTACCCTGCTTCTTCCACGCTTCCACCACAGCAGCAAGTGCCTATGCCGAGACCTCCTCCCGGAGGAATGTACCAAGGCGTGCCACCCTATTATTGA 1185 0.5595 MDFSKKRKTEENGDADSLSSPPSQAFPPATVPTTAPLAAEDIRKILRPFSQEQLLDLLQSASLRHSDVLDAVRAVADRDSTLRKLFVRGLAGETTSETLRSVFSTFGELDEAIVIFDKATGRSKGYGFVVFRHVDGAILALKDPSKKIDGRMTVTQLAAAGGPGGSGDVSARKVFVGNVPFEISSDKLLSEFLKFGEVEEGPLGFDKSSGKSRGFAFFVYKTEEGARASLVEPVKTIDGHQVICKLAVDSKKTKPFGGDQHQHQHTQHTQHQQQQQQHPQQQMQQQGPMMIPQYGGYGGNGYGIQHSVPPYNNPVQVSGGGGYGHGIGGGYGNSQMGGPVSGDYGTRLPPNSGGGFPEGSQYGYPASSTLPPQQQVPMPRPPPGGMYQGVPPYY* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0406 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Vra7g0406 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 240 IPR000504 GO:0003723
Vra7g0406 394 Gene3D - 166 288 IPR012677 -
Vra7g0406 394 CDD RRM_RBM24_RBM38_like 83 157 - -
Vra7g0406 394 MobiDBLite consensus disorder prediction 372 394 - -
Vra7g0406 394 MobiDBLite consensus disorder prediction 267 289 - -
Vra7g0406 394 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 365 - -
Vra7g0406 394 SUPERFAMILY RNA-binding domain, RBD 169 264 IPR035979 GO:0003676
Vra7g0406 394 MobiDBLite consensus disorder prediction 253 298 - -
Vra7g0406 394 PANTHER GEO13361P1-RELATED 1 365 - -
Vra7g0406 394 MobiDBLite consensus disorder prediction 349 394 - -
Vra7g0406 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 160 IPR000504 GO:0003723
Vra7g0406 394 SMART rrm1_1 173 245 IPR000504 GO:0003723
Vra7g0406 394 SMART rrm1_1 84 156 IPR000504 GO:0003723
Vra7g0406 394 SUPERFAMILY RNA-binding domain, RBD 77 162 IPR035979 GO:0003676
Vra7g0406 394 MobiDBLite consensus disorder prediction 1 32 - -
Vra7g0406 394 Gene3D - 74 161 IPR012677 -
Vra7g0406 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 253 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0406 Vra-Chr7 6431119 6438516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0406 155 247 C2H2 Transcription Factor Family AT2G19380 31.183 3.76e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0406 K12741 - gmx:100816590 546.584