Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0405 ATGGTTCACTCCTTCTATGAGAAAAGCTCTTCTTCTGGCTCTGATATTTCGGGGTTGTTCAATCCCACTTTGCAAAGTGTTGGAGCTTCTTCCAATGGTGAAGTTGCGAAGGATGGCTTGTCATCCGCACATTCTTTGGTTTATGAGAGTGAGAAAGGAGAGCTGGTGAAGTGCTCTTCAGCTGCAAGGGTAGGGAAGAATGAGATTTGTGAGGCCAAAGCTTTGGCTGCTTTGAAGAATCACAGTGAAGCAGAGAGAAGAAGGAGGGAGAGAATAAACGGTCATCTTGCAACACTACGTGGCCTTGTACCATCCACTGAAAAGATGGATAAAGCCACTTTACTGGCTGAAGTGATAAAGCAAGTGAAGGAATTGAAGAAAACTGCAGTAGAAGCAAGCAAGGGTTTTCCTATCCCAATGGATGCTGATGAAGTGAAAGTTGAACCATGTGATGGATTATCCATGTCTTACAGTGCAACTATTTGCTGTGATTTTCGACCTGAAATAATATCTGACCTAAGACAAACCCTTGATTCTCTTCCACTGCATCTAGAGAAGGCAGAAATTTCAACTTTGGCAGGAAGAATGAAGAATGTATTCGTCTTCACATGTTGCAAAGAGAACATTAATATTGATACTGAAGCATGCCAAGCTCTTGCAAGAACTGTTCATCAGGCACTGTGTTCTGTACTGGAAAAGGCTTCTGCCTCACTTGAGTTCTCACCCAGAACATCACATGCTAACAAGAGGAGAAGACTATGCTTTATTGAAACATCCACTTCCTCATGCAACCATGGATCTTGTTCCTGTTGA 813 0.4268 MVHSFYEKSSSSGSDISGLFNPTLQSVGASSNGEVAKDGLSSAHSLVYESEKGELVKCSSAARVGKNEICEAKALAALKNHSEAERRRRERINGHLATLRGLVPSTEKMDKATLLAEVIKQVKELKKTAVEASKGFPIPMDADEVKVEPCDGLSMSYSATICCDFRPEIISDLRQTLDSLPLHLEKAEISTLAGRMKNVFVFTCCKENINIDTEACQALARTVHQALCSVLEKASASLEFSPRTSHANKRRRLCFIETSTSSCNHGSCSC* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0405 270 Pfam Helix-loop-helix DNA-binding domain 80 125 IPR011598 GO:0046983
Vra7g0405 270 Gene3D - 73 134 IPR036638 GO:0046983
Vra7g0405 270 PANTHER DNA BINDING PROTEIN-LIKE 5 263 - -
Vra7g0405 270 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 129 IPR036638 GO:0046983
Vra7g0405 270 CDD ACT_UUR-ACR-like 160 227 - -
Vra7g0405 270 SMART finulus 82 131 IPR011598 GO:0046983
Vra7g0405 270 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 125 IPR011598 GO:0046983
Vra7g0405 270 PANTHER TRANSCRIPTION FACTOR BHLH30 5 263 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0405 Vra-Chr7 6422821 6426314 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0405 73 233 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.176 5.41e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0405 HLH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0405 - - gmx:100804756 434.876