Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0391 ATGGAAGGAGGAGGAGGAGCTGCTCCGCCTGCTGACACCGTTATGTCGGATGCTGCACCGCATCCAGAACCCCATCAGCCCCCGGCAGCAGCCATGGGGATCGACAATATTCCGGCCACGCTCAGTCACGGTGGCAGGTTCATCCAATACAACATCTTTGGAAACATATTCGAAGTCACCGCCAAATACAAGCCACCCATCATGCCCATCGGGAAAGGCGCATACGGCATCGTTTGCTCGGCTTTGAACTCGGACACGAATGAGCATGTTGCCATCAAGAAGATTGCGAATGCTTTTGACAACAAGATTGACGCCAAGAGGACCCTCCGAGAAATCAAGCTGCTTCGTCACATGGATCATGAAAACGTGGTTGCAATCAGGGATATAGTGCCACCACCTCAAAGGGAGATCTTCAATGATGTTTACATTGCTTATGAATTGATGGACACTGACCTGCACCAAATCATTCGTTCAAATCAAGCATTATCAGAGGAGCATTGTCAGTATTTTCTGTATCAAATTCTCCGTGGGTTGAAGTATATACATTCTGCAAATGTTCTGCACAGGGACTTAAAGCCTAGCAACCTTCTCCTGAATGCAAACTGCGACTTAAAAATTTGTGATTTTGGACTGGCTCGAGTTACCTCTGAAACTGATTTTATGACTGAATATGTTGTTACAAGATGGTACCGTGCACCAGAGCTTCTGTTGAACTCTTCTGATTACACAGCAGCAATTGATGTATGGTCTGTTGGTTGTATTTTCATGGAACTGATGGATCGAAAGCCTTTGTTTCCTGGAAGAGATCACGTGCATCAGTTGCGTCTACTTATGGAGTTGATTGGCACCCCTTCAGAAGATGATTTGGGGTTTCTGAATGAAAATGCTAAGAGATACATTAGGCAATTGCCTCCTTACCTCCGTCAATCTTTCCAAGAAAAGTTTCCACATGTCCACCCTGAAGCTATAGATCTTGTTGAGAAAATGTTAACTTTTGACCCTAGAAAAAGGATTACTGTTGAAGATGCACTGGCACACCCGTACTTAACGTCTCTGCATGACATCAGTGATGAACCTGTGTGCATGACTCCCTTTAGCTTTGACTTTGAGCAACATGCTTTGACTGAGGAACAGATGAAAGAACTGATATACCGAGAGGCTTTAGCATTTAATCCTGAGTATCAGCAGTAG 1191 0.4484 MEGGGGAAPPADTVMSDAAPHPEPHQPPAAAMGIDNIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSDTNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIVPPPQREIFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEDDLGFLNENAKRYIRQLPPYLRQSFQEKFPHVHPEAIDLVEKMLTFDPRKRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQQ* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0391 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Vra7g0391 396 SMART serkin_6 64 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0391 396 MobiDBLite consensus disorder prediction 1 32 - -
Vra7g0391 396 SUPERFAMILY Protein kinase-like (PK-like) 69 357 IPR011009 -
Vra7g0391 396 Gene3D Transferase(Phosphotransferase) domain 1 148 376 - -
Vra7g0391 396 ProSitePatterns MAP kinase signature. 99 202 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vra7g0391 396 ProSitePatterns Protein kinases ATP-binding region signature. 70 94 IPR017441 GO:0005524
Vra7g0391 396 CDD STKc_TEY_MAPK 57 392 - -
Vra7g0391 396 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 27 394 - -
Vra7g0391 396 Pfam Protein kinase domain 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0391 396 ProSiteProfiles Protein kinase domain profile. 64 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0391 396 Gene3D Phosphorylase Kinase; domain 1 47 386 - -
Vra7g0391 396 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 27 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0391 Vra-Chr7 6195643 6200139 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0391 1 396 MAP Kinase Gene Family AT2G43790 87.909 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vra7g0391 Pkinase 1.7e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0391 K14512 - gmx:100805830 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0391 7 6195643 6200139 Vra7g0391 7 6195643 6200139 ECH
Vra7g0391 7 6195643 6200139 Vra11g0342 11 2458986 2462219 PCT