Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0386 ATGGGAAAGAAGGGGAGTTGGTTTTCTGCAATCAAAAGGGTTTTCACTCACCACTCCAAGGGGAAGCAGGATGCGGATAACAAAGGCACAAAAGAAAAGAAGAAAAGTTTAGGAAAACTAAAGCATGGAGAGACCAATTCATTCATCCCCCTCTTCAGAGAGCCAAGTAGTATTGAGAAAATCTTTGGGGACTTTGAAAGGGAGCAACAACTACTGGGGTTAAGGCCAGCCACTCCTCCTGAGAGACCCAAAACTCCACCTTATGTCCCTCCAAGAGCTCCTTCTCCTAGGCCTCCTTCTCCTAGGCCTCCTTCTCCAAGGGCTCCTTCTCCAAGGGCTGCTTCTCCCAGGGCTTCTTCCCCACGAGTTACCTCTCCCAAAGCTACATCTTTCCGGAATTCTCATCACCAAAAGGAGGTTGGCTACAGACCAGAACCAACTTTGAGGCAGCAGAATGCCTCAGCTACTAAGATCCAGGCTGTTTACAGAGGTTATATGGCCAGGAGGAGTTTTAGAGCACTAAAGGGTCTGGTGAGGCTCCAAGGAGTAGTAAGAGGACAGAATGTGAAGAGACAGACAGTAAATGCCATGAAACACATGCAACTCTTAGTGCGAGTTCAATCTCAGATTCAGTCTCGAAGGATCCAGATGTTGGAAAACCAGGCACGATATCAAGCTGAGTTCAAGAATGATAAGGATGCAGCAAGTATCTTGGGCAAACTCACTTCTGAAGCAGGTAATGAAGAGTGGGATGATAGCTTACTTACCAAAGAGGAAGTAGAGGCAAGGTTGCAGAGGAAGGTAGAAGCAATAATCAAAAGAGAAAGAGCAATGGCATTTGCATATTCACATCAGCTATGGAAAGCCACTCCAAAATCAACTCACACCCCGGTGGCAGATACAAGATCAGGTGGATTTCCTTGGTGGTGGAACTGGTTGGAAAGACAAGCACCTGCACCTGCAGCAGCAACTCCACAAGAAAGACCAGTGCTTAAGAATTTTCAACTGACACCTCCAAGGCCATACTCAGAGCAAAAGACTAGTCCAAGACCCGGATCCAGCACTCAAAGACAACACCAGCCCCATTTTGCTTTTGATAACATGGACACTCCCACACCAAAGTCCACAAAATCAACCATAGTGACATCTTCAAAACCAGTACGAACACCTCCATATAGAACTCCTCAGGCAAACAGTTCAGGCTCTGGCTCTAAATTTCTGAGACTGAGGGGTGTGGGAGCCAATTCACCCTTTGATGTGCCACTGAAGGATGATGAAAGTCTCACAAGCTGCCCACCATTTTCAGTGCCAAACTACATGGCTCCAACCCTCTCTGCCAAGGCCAAAGTACGAGCTAGTAGTAATCCTAGAGAAAGGCTTGGTGGAACTCCAACAAGTACTGATTCAAAGAGGAGACTCTCATTCCCATTGTCGCAAGGAATAGGGTCTTTCAAGTGGTCTAAAGGGTTCTCAAGCAAGGATCAAAGGGTGCCAGATAAATTTCAGCCACTTGACTCTATAGGAAATGTAGAAGCCAAAAGAACCACTTGGGAGAAATAG 1560 0.4654 MGKKGSWFSAIKRVFTHHSKGKQDADNKGTKEKKKSLGKLKHGETNSFIPLFREPSSIEKIFGDFEREQQLLGLRPATPPERPKTPPYVPPRAPSPRPPSPRPPSPRAPSPRAASPRASSPRVTSPKATSFRNSHHQKEVGYRPEPTLRQQNASATKIQAVYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTVNAMKHMQLLVRVQSQIQSRRIQMLENQARYQAEFKNDKDAASILGKLTSEAGNEEWDDSLLTKEEVEARLQRKVEAIIKRERAMAFAYSHQLWKATPKSTHTPVADTRSGGFPWWWNWLERQAPAPAAATPQERPVLKNFQLTPPRPYSEQKTSPRPGSSTQRQHQPHFAFDNMDTPTPKSTKSTIVTSSKPVRTPPYRTPQANSSGSGSKFLRLRGVGANSPFDVPLKDDESLTSCPPFSVPNYMAPTLSAKAKVRASSNPRERLGGTPTSTDSKRRLSFPLSQGIGSFKWSKGFSSKDQRVPDKFQPLDSIGNVEAKRTTWEK* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0386 519 MobiDBLite consensus disorder prediction 117 131 - -
Vra7g0386 519 Pfam IQ calmodulin-binding motif 153 172 IPR000048 GO:0005515
Vra7g0386 519 MobiDBLite consensus disorder prediction 17 41 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 319 405 - -
Vra7g0386 519 Gene3D - 149 222 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 1 151 - -
Vra7g0386 519 PANTHER IQ-DOMAIN 13 1 510 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 449 473 - -
Vra7g0386 519 SMART iq_5 150 172 IPR000048 GO:0005515
Vra7g0386 519 MobiDBLite consensus disorder prediction 338 405 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 458 473 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 488 519 - -
Vra7g0386 519 MobiDBLite consensus disorder prediction 79 111 - -
Vra7g0386 519 ProSiteProfiles IQ motif profile. 151 179 IPR000048 GO:0005515
Vra7g0386 519 PANTHER IQ-DOMAIN 5-RELATED 1 510 - -
Vra7g0386 519 Pfam Protein of unknown function (DUF4005) 414 482 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0386 Vra-Chr7 6137347 6143592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0386 1 516 IQD Protein Family AT3G59690 50.998 1.05e-154 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0386 - - gmx:100807777 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0386 7 6137347 6143592 Vra7g0386 7 6137347 6143592 ECH