Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0382 ATGATGAAGAAGAAGAAATCAGATGCAAAAAGGCAGCATGACGACTACAATGAGTTTAAGAGCAATGAAGATAAAGATGATAGTCAATCCAAAATGAAGGAGTGGAAGAAGAAAACACTGAGTGAAGAAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGGAGGTGAAAGCTATTCCAAAGGTAAGAATAGGAAGAAGAAAAAATTGAGTAAAGAAAGCAAAAGTAAGGAGTGTGAAGTCTTTGAAAAGAATGAAGGTGAGGGTGAAGGTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAGGAAGGCAAAAGTAAGGAGTGTAATGAATTTGAAAACAATAATGGTGAAGATGATGCCCAAGGCATTAAGGGGGAAAAGAGAAAGTTGAGTAAAGAAAGCAAAAGTGAGGAGTATAATGTCTTTGAAACAAATGAAGGCGAAGATGATGCCAAAGGTAAGAAGAAGAGGAAAAAACATGGTGAAGAAAGCAAAAGTCAGGAGTATAATGTGTTTGAAAATAACGAAGGTGAAGGTGATGTCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTNCGGAGTATAATGTATTTCAAACGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACANAAATGTAATGACAAAGAAGAAAGCCAGGGAAGATAATGATGACTCTTCTNATCCTGCACACAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGGTTAAATCAGCTGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTGTAGATATGGTTCTCCATTGCCAGGCTCATCGGGAAATTAGATTTTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATTGTCGTGCCCATATTTTGTTTGAAGGGAACGAGAAAAGGTGGACACCTGAAGAGTATGCATTTTTACGGAAGGTCAAGGAAGAATATGGATATAATTGGAGACAAGTAGCTGACGCATTGGGCAAAAGTCGAGTTCAAGTGAAGGATGCATGGTGTAAATTGAAATTAAATAGAAATAAAGGACGATGGAGCCAAGAGGAGTATCAAAAGTTATTTGATTTAATGAACCAGGACCTACGTGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGCTCAAAAGTTGGGCACTAGATACTCCGCGGACTGCTGCCACAAATGGTATGATAATTTAAGATCTCCCATTGTTGCTGCTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTTGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTATCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAGATTCTTGCAAAAAGATATTGCCCCAACTTATTGGAAGCAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 1686 0.3968 MMKKKKSDAKRQHDDYNEFKSNEDKDDSQSKMKEWKKKTLSEEGKSKEYNEFERNGGESYSKGKNRKKKKLSKESKSKECEVFEKNEGEGEGDAKGKERKKKKLREEGKSKECNEFENNNGEDDAQGIKGEKRKLSKESKSEEYNVFETNEGEDDAKGKKKRKKHGEESKSQEYNVFENNEGEGDVQGKKRKKKKLSKENKSXEYNVFQTNEGEDNVEGRKSKKEKMIEDSKSKDXNVMTKKKAREDNDDSSXPAHSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQVKSAVYNFIESRGLGDEGVDMVLHCQAHREIRFCWKEIAAALPHRPVYSVYCRAHILFEGNEKRWTPEEYAFLRKVKEEYGYNWRQVADALGKSRVQVKDAWCKLKLNRNKGRWSQEEYQKLFDLMNQDLRVRASQGYRKSKHGMLRDNIGWEAIAQKLGTRYSADCCHKWYDNLRSPIVAAGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIIRYIGEHGGKPFAEQVEILAKRYCPNLLEAREAFDAKPLVC* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0382 561 MobiDBLite consensus disorder prediction 7 62 - -
Vra7g0382 561 SUPERFAMILY Homeodomain-like 446 524 IPR009057 -
Vra7g0382 561 Coils Coil 204 206 - -
Vra7g0382 561 Gene3D - 357 397 - -
Vra7g0382 561 PANTHER GB|AAC33480.1 3 560 - -
Vra7g0382 561 SUPERFAMILY Homeodomain-like 353 409 IPR009057 -
Vra7g0382 561 MobiDBLite consensus disorder prediction 1 262 - -
Vra7g0382 561 MobiDBLite consensus disorder prediction 214 252 - -
Vra7g0382 561 ProSiteProfiles Myb-like domain profile. 397 466 IPR001005 -
Vra7g0382 561 CDD SANT 355 397 IPR001005 -
Vra7g0382 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 355 402 IPR017930 -
Vra7g0382 561 ProSiteProfiles Myb-like domain profile. 352 393 IPR001005 -
Vra7g0382 561 Coils Coil 186 202 - -
Vra7g0382 561 MobiDBLite consensus disorder prediction 74 174 - -
Vra7g0382 561 Gene3D - 398 470 - -
Vra7g0382 561 ProSiteProfiles Myb-like domain profile. 468 521 IPR001005 -
Vra7g0382 561 SMART sant 352 399 IPR001005 -
Vra7g0382 561 SMART sant 472 523 IPR001005 -
Vra7g0382 561 SMART sant 401 468 IPR001005 -
Vra7g0382 561 SMART sant 280 351 IPR001005 -
Vra7g0382 561 Pfam Myb-like DNA-binding domain 356 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0382 Vra-Chr7 6046482 6050722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0382 356 539 MYB Transcription Factor Family AT5G02320 26.289 2.09e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra7g0382 Myb_DNA-bind_6 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0382 - - var:108338141 844.343