Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0377 ATGATAGCCAGCTCTTTCTGCAATGCTGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGAGCATAAAAGGAGTCCCTGCTCTGTTGACCAAAGCAGTTATACTTCTATTGCATCTAAAAGGCAAAAGGCTGATTTATCTATCAGCACTAAGGAGAGGAAGGAGAAGATTGGGGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGAATACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCATACCTTGAAACTTCAGCAGCAGCCAAGATGCAGGGTATGGAAGCATGCAGCCTGAGGAGTAGAGGGTTATGCCTTGTTCCTGTGTCATTTACAATTGGAGTTGCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAAACTACTACTTCACCTAAATTGGAGAATGATGTGTCTCAATTTCATTGA 504 0.4206 MIASSFCNADSMFSREEGIDVRKMMEHKRSPCSVDQSSYTSIASKRQKADLSISTKERKEKIGERIVALQQLVSPYGKTDTSSVLKEAMEYIGFLHKQVKLLSAPYLETSAAAKMQGMEACSLRSRGLCLVPVSFTIGVAESNGADIWAPIKTTTSPKLENDVSQFH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0377 167 CDD bHLH_AtbHLH_like 52 103 IPR045239 -
Vra7g0377 167 SMART finulus 52 101 IPR011598 GO:0046983
Vra7g0377 167 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 95 IPR011598 GO:0046983
Vra7g0377 167 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 149 - -
Vra7g0377 167 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 110 IPR036638 GO:0046983
Vra7g0377 167 PANTHER TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1 13 149 - -
Vra7g0377 167 Gene3D - 43 117 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0377 Vra-Chr7 5953403 5957853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0377 24 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05710 55.769 6.47e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0377 - - vun:114178105 317.775
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0377 7 5953403 5957853 Vra7g0377 7 5953403 5957853 ECH