Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0376 ATGGTGGACGACTTCATTGTTTGCATCGATCGGATAATAGCCTCCACGGCCTGTTTTGGATCAGTGGATGCAAGAACCTGTGATCATGGAGTTGATCTTATGATACCGGTTTCTGAGAATGCTGGAGAAGGGTGTTGCTCTTCTCCAAACAAGTATGATGATGATGATGATGATGTTGTTGTTGAGTGTAGAATATGTCAGGAAGAAGATCAAGTCCAAGCCATGGAGGCACCTTGTTCTTGTAATGGCACTCTCAAGTTTGCTCATAGGAATTGTATCCAGAGATGGTGCAATAAGAAAGGAAATACAATATGTGAAATCTGTAAACAGGAGTTTTCACCAAATTATTCTCTTCCACCAGCCAGAAGCAATGCAATTATGGCAATTGATATAAGGCAAGAATCGGGGAATAATGCTGATATGCATGTTGACCTAGCTTCAGCTGAGCACCAGTTGCTGCAAACTGAGTATGAAGATTATTCCATGTCACAAACCAGTAGCATTGCTTGCCTACGATCTACCACTCTCTTGTTGTTGATAATTTTGCTTGTACGCCAAGCTTTAATGGTCACAAAGAACTCCACAACTGGACGAGATGTGTCAATAATCTTTAATCTTGAGATATCACTTCTTCAATTTGCTGGTGTTCTTTTGCCTTGCTATGGAATGGCACGATCCTGGTATGCAATACAAAACCGAAGACGACAGGTTTAA 714 0.4118 MVDDFIVCIDRIIASTACFGSVDARTCDHGVDLMIPVSENAGEGCCSSPNKYDDDDDDVVVECRICQEEDQVQAMEAPCSCNGTLKFAHRNCIQRWCNKKGNTICEICKQEFSPNYSLPPARSNAIMAIDIRQESGNNADMHVDLASAEHQLLQTEYEDYSMSQTSSIACLRSTTLLLLIILLVRQALMVTKNSTTGRDVSIIFNLEISLLQFAGVLLPCYGMARSWYAIQNRRRQV* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0376 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 114 IPR013083 -
Vra7g0376 237 SMART ringv_2 62 109 IPR011016 GO:0008270
Vra7g0376 237 SUPERFAMILY RING/U-box 61 113 - -
Vra7g0376 237 PANTHER OS01G0894600 PROTEIN 1 236 - -
Vra7g0376 237 ProSiteProfiles Zinc finger RING-CH-type profile. 55 115 IPR011016 GO:0008270
Vra7g0376 237 CDD RING_CH-C4HC3_MARCH 63 109 - -
Vra7g0376 237 Pfam Protein of unknown function (DUF3675) 114 227 IPR022143 -
Vra7g0376 237 Pfam RING-variant domain 63 108 IPR011016 GO:0008270
Vra7g0376 237 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 236 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0376 Vra-Chr7 5907362 5912815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0376 55 109 C3H Transcription Factor Family AT2G37950 41.935 1.12e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0376 - - gmx:100812120 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0376 7 5907362 5912815 Vra7g0376 7 5907362 5912815 ECH