Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0362 ATGGGTTCGGTTCTGCCAGAACTGAGCTTGGATTTAAGACCCTCTTTTGTCCCCAAAACCATCACCGATTTCCTCCGTCACCTCTCTTCCGCCACCGACAGGCTAGCCACTCTTCACGATTTCCTCGCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTCTCTCCATGCTCCTCTTAAACGACGCAATTTCACTCCTCAAGACGGAATCTCAGAAATGTGGGCCGCCTGATTCTTCACCTGTGTTGGAGGAGTTCATCCCTTTGAAGAAAGAATATGATCGGAATGAAGGAAATAACTCTAATGATAATGACATGGATAACGAATGCAGGGACAAGAAGAATTGGTTGAGTTCGGTGCAGCTCTGGAATAACAGTACTACTGCATCTGATCGGAAACATCAACAACTTCATACATTAGAAAATAAGAAAATTGAAGAAGGGCAATATGTTGGTGAGGATCCTTTTCAGTCCTGCAGCAATATAAATGGGGGAAGAAGGGCCTTTTTGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACGGCGGGACTGGCTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCCCTTCAGAACCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAATAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCGAGGAAACAGAGAAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAATTAGGAGGTTCTCAAGCGGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACTAACGATGAAGTGAAAAGTCACTTACAAAAATACCGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTTGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTACAGGGTCTCGAGGAGGAACCTCCCCAACTGAGGGTGACAGCATGGAAGATGACGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCCGGAAAAGTTGATGTATAG 1200 0.4717 MGSVLPELSLDLRPSFVPKTITDFLRHLSSATDRLATLHDFLARLEDELRKIHAFKRELPLSMLLLNDAISLLKTESQKCGPPDSSPVLEEFIPLKKEYDRNEGNNSNDNDMDNECRDKKNWLSSVQLWNNSTTASDRKHQQLHTLENKKIEEGQYVGEDPFQSCSNINGGRRAFLPFSRYSSSSSSVPVATAGLAAATKEEKEESVMNRLSLQNPSVKEGCGSRGSRSSSNRAVSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAGSGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTTGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKVDV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0362 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 254 314 IPR017930 -
Vra7g0362 399 MobiDBLite consensus disorder prediction 338 399 - -
Vra7g0362 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 393 IPR044787 GO:0003700|GO:0006355
Vra7g0362 399 MobiDBLite consensus disorder prediction 209 259 - -
Vra7g0362 399 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 257 312 IPR006447 GO:0003677
Vra7g0362 399 MobiDBLite consensus disorder prediction 199 260 - -
Vra7g0362 399 MobiDBLite consensus disorder prediction 338 369 - -
Vra7g0362 399 MobiDBLite consensus disorder prediction 97 117 - -
Vra7g0362 399 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Vra7g0362 399 Gene3D - 256 314 - -
Vra7g0362 399 PANTHER TRANSCRIPTION FACTOR HHO6 7 393 - -
Vra7g0362 399 MobiDBLite consensus disorder prediction 380 399 - -
Vra7g0362 399 SUPERFAMILY Homeodomain-like 254 315 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0362 Vra-Chr7 5647561 5650265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0362 7 333 G2-like Transcription Factor Family AT2G03500 39.316 2.00e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra7g0362 Myb_DNA-binding 3.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0362 - - gmx:100812420 610.912