Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0355 ATGGCTCAACCCAGCAGCAACGGCGATCTGAGTCAGCAGCAAGGACAGCAGCAGGAGCAGCAGCAGTGGCCCCAGCCGCATCAGTACCAGCACCAATGGATGACCATGCAGTATCCGGCCACCGCCATGGCTATGATGCAACAACAGATGATGATGTACCCCCAGCATTACATGCCCTATGTCCACCCTCATTATCCCCCGCCGCCGCCCCCTCCCTCCCACCACCACCATCACAAACAGCCCGCCTCATCTCCCGCCGCCTCCTCCGACGAGATCAGGACCATCTGGCTCGGCGACCTCCACCATTGGATGGACGAAAACTATCTCCACAACTGCTTTGCTCACACCGGCGAGGTTGTGTCGGCCAAGGTCATTCGGAATAAGCAAACTGGTCAGTCTGAGGGATATGGATTCGTTGAGTTCTATTCACGTGCGACGGCTGAGAAAGTCTTGCAGAACTATAACGGCACCATGATGCCAAACACAGATCAGGCATTTCGTCTGAATTGGGCCACATTCAGTGCCGGGGATAGGCGATCTTCTGATGCTACTTCTGATCTCTCAATATTTGTGGGGGACTTGGCCATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCGAGCAGATTTTCGTCTATTAAGGGAGCAAAAGTTGTCATTGATTCTAATACTGGTCGCTCAAAAGGTTATGGTTTTGTTAGGTTTGGGGATGAAAACGAGAGAACGAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGACCCATGAGAATAGGTGTTGCAACTCCCAAGAAAACTTATGGCTATCAACAACAATATTCTTCTCAAGCTGTGGTATTGGCTGGTGGACACTCGGCTAATGGTGCTGTGGCCCAAGGTTCCCAATCTGAAGGAGATTCGAACAACACTACCATATTTGTTGGTGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCTGTGAAAATTCCATTGGGAAAAGGGTGTGGATTTGTTCAATTTGCTGACAGAAAGAATGCCGAGGATGCAATTCAGGCAATGAATGGGACAGTAATTGGGAAGCAGACTGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGAAGTGATTCCAATGGAGGCCATTATGGTGGTCAGGGTTATGGAGGCCATGGATTTGCTGTGAGACAGAATCAGGATCTAGCCATGCAACCTGCTGCTGCTGCAATTCAAGGGGCTTCCTGA 1275 0.4933 MAQPSSNGDLSQQQGQQQEQQQWPQPHQYQHQWMTMQYPATAMAMMQQQMMMYPQHYMPYVHPHYPPPPPPPSHHHHHKQPASSPAASSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFYSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGDRRSSDATSDLSIFVGDLAIDVTDAMLQETFASRFSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGYQQQYSSQAVVLAGGHSANGAVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGEVVSVKIPLGKGCGFVQFADRKNAEDAIQAMNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGHYGGQGYGGHGFAVRQNQDLAMQPAAAAIQGAS* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0355 424 Gene3D - 287 410 IPR012677 -
Vra7g0355 424 CDD RRM3_NGR1_NAM8_like 305 376 - -
Vra7g0355 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 378 IPR000504 GO:0003723
Vra7g0355 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Vra7g0355 424 Gene3D - 174 279 IPR012677 -
Vra7g0355 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 422 - -
Vra7g0355 424 SMART rrm1_1 94 169 IPR000504 GO:0003723
Vra7g0355 424 SMART rrm1_1 307 374 IPR000504 GO:0003723
Vra7g0355 424 SMART rrm1_1 188 262 IPR000504 GO:0003723
Vra7g0355 424 SUPERFAMILY RNA-binding domain, RBD 296 402 IPR035979 GO:0003676
Vra7g0355 424 SUPERFAMILY RNA-binding domain, RBD 185 281 IPR035979 GO:0003676
Vra7g0355 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Vra7g0355 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 371 IPR000504 GO:0003723
Vra7g0355 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Vra7g0355 424 Gene3D - 92 172 IPR012677 -
Vra7g0355 424 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 20 422 - -
Vra7g0355 424 SUPERFAMILY RNA-binding domain, RBD 60 175 IPR035979 GO:0003676
Vra7g0355 424 MobiDBLite consensus disorder prediction 1 26 - -
Vra7g0355 424 CDD RRM1_SECp43_like 94 174 - -
Vra7g0355 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Vra7g0355 424 MobiDBLite consensus disorder prediction 64 89 - -
Vra7g0355 424 CDD RRM2_SECp43_like 186 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0355 Vra-Chr7 5521483 5526350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0355 92 375 Eukaryotic Initiation Factors Gene Family AT2G23350 29.110 3.14e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0355 - - gmx:100814564 635.18