Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0349 ATGAGCTTTCAGGACATCGAGGCTGGTCGGCCCTTCGGTTCCAGGCGTGGCTTGGCCAACGGCAAGCAGGACCCCACGCAGGCAGTGGCTGCCGGAATATTTCAGATCAACACCGCCGTCTCCACCTTCCAGAGACTCGTCAACACCCTCGGAACCCCCAAAGATACCCCCGAGCTCCGCGAGAAGCTCCACAAGACAAGACTACATATTGGGCAATTGGTGAAGGATACATCAGCTAAACTTAAGCAAGCTAGTGACATTGATCATCATGCTGAAGTTAATGCGAGCAAGAAGATCGCAGACGCTAAACTTGCGAAAGATTTTCAAGCAGTATTGAAAGAGTTTCAGAAGGCACAACGTCTTGCAGCTGAGAGGGAAACAGCATACACTCCTTTTGTTCCCCAAGCAGTCCTTCCTTCCAGCTATACTGCTGGTGAATTAGGTGTTGGTTCTGATAAATCACCAGAAGAGCGTGCCTTACTCGTGGAATCAAGGAGGCAGGAGGTTTTGTTCTTAGATAATGAGATTGCCTTTAACGAGGCCATCATTGAGGAAAGGGAGCAAGGCATTCAAGAAATACAGCAGCAAATTGGTGAAGTTAACGAGATCTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACCATGATTGATGATATTGGCTCCAACATTGAGAACTCCCATGCAGCAACAGCACAAGCAAAATCTCAACTTTTAAAAGCTTCAAAGACCCAAAGATCAAATTCCTCTTTGACATGCTTGCTTTTGGTGATTTTCGGGATTGTGCTTCTGATCGTGATCATAGTTCTTGCTGCTTAG 822 0.4684 MSFQDIEAGRPFGSRRGLANGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHAEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGELGVGSDKSPEERALLVESRRQEVLFLDNEIAFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIENSHAATAQAKSQLLKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0349 273 Gene3D - 19 133 - -
Vra7g0349 273 PANTHER SYNTAXIN OF PLANTS PROTEIN 2 272 - -
Vra7g0349 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vra7g0349 273 PANTHER SYNTAXIN 2 272 IPR045242 -
Vra7g0349 273 SMART tSNARE_6 175 242 IPR000727 -
Vra7g0349 273 CDD SNARE_Qa 200 241 - -
Vra7g0349 273 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g0349 273 CDD SynN 23 147 IPR006011 GO:0016020
Vra7g0349 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Vra7g0349 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
Vra7g0349 273 SMART SynN_4 14 127 IPR006011 GO:0016020
Vra7g0349 273 Gene3D - 174 273 - -
Vra7g0349 273 Pfam SNARE domain 216 268 IPR000727 -
Vra7g0349 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0349 Vra-Chr7 5460162 5464301 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0349 1 261 SNARE and Associated Proteins AT5G46860 78.544 2.48e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0349 - K08488 gsj:114391232 437.573