LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g0348	ATGGAGGGAGCAGGCAGTGGAGGCGGAGAAGTGTCGACGGCGGGGCCGACACCGATTACAAACGCTAACGCGCCGCCGCCTTTCCTGAGCAAGACGTATGACATGGTGGACGACCCTTCGACGGACTCAATTGTGTCGTGGAGTCCAACGAACAACAGCTTCATTGTTTGGAACCCTCCGGAGTTCGCCAGAGACCTTTTGCCGAAACACTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGTTAAACACCTACGGTTTTAGAAAGGTAGACCCGGATCGCTGGGAGTTTGCAAATGAGGGATTTTTAAGGGGTCAAAAGCACTTGCTTAAGACCATATCTAGGCGGAAACCTGCCCATGGTCATAATCATCAACAAGCACAACAAGTACACGGACAGAGTTCATCGGTTGGGGCATGTGTAGAAGTTGGGAAGTTTGGACTTGAGGAAGAGGTTGAAATTCTCAAGAGAGATAAGAATGTGCTTATGCAAGAGCTTGTGAGATTGAGGCAGCAGCAGCAATCTACTGATAACCAACTGCAGACTATGGTTCAGCGGCTTCAGGGAATGGAGCAACGACAGCAACAAATGATGTCATTCCTTGCAAAGGCTGTTCAGAGCCCTGGTTTCTTAGCTCAATTTGTACAACAGCAAAATGATAGTAATAGACGCATATCAGAGGCAAATAAAAAACGTCGACTCAAGCAGGAAGGTATTGGTGAAATGGAACATAGAGCTGCTTCTGATGGACAAATTGTTAAATATCAACCTATGATAAATGAAGCAGCAAAAGCAATAGTAAGGCAAATAATGAAATTGGATGCTTCTCGATTGGAATCTTTCGGTAATAACCCCGATAATTACTTCATTGGTGTTCATTCATCACCATCCAGTGAAATGGACAGGGGAAACTCTTTGAGTCGATCTTCTGGAGTAACACTTCAAGAGGTCCCTCCAACTAAGGTGCAGTCTTCTTATGTTCCATCTGCAACAAGGACTCAAGGGCACGGTCCTTCAACTGGAAAATCTGAGATTCTATCTTCTCCTCAAGTTGCAGCCTGTGAAGAAGTTACATATCCTAATAGAAATGTTTCAGTTGGAGAACCTAATGCACCTGCTATCCCTGTTACTCAAACAGATGAAATCATGCCGGACATTGCTACAATACCAGATATAGTGGCAGGAAACATTCTCGATATTCCTCAAGAAAATTATATGGCATCAGAAACTGGTGGTGACGGATACATGGGTCCTGCTTCATTTGGGGTGAATATGTCACTGCCCCTTGATTTTGATAGTATTTCAACTGAACCAGACATCGATGATTTGTTGAACAATCCTCACTTTTGGGATGATATTGTGCGAACTCCGGTATCAGAGGATATTGAAACGAATGGTCCTGAAGTATTCTATGAGAATGAGGTGCAGCCAACTGAAAATGGATGTGAAAAATCTCAACATATGGACCTACTTACTGAACAGATGGGCTTACTTTCTTCTGATGCAAAAAAAAATTGA	1521	0.4385	MEGAGSGGGEVSTAGPTPITNANAPPPFLSKTYDMVDDPSTDSIVSWSPTNNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTISRRKPAHGHNHQQAQQVHGQSSSVGACVEVGKFGLEEEVEILKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNDSNRRISEANKKRRLKQEGIGEMEHRAASDGQIVKYQPMINEAAKAIVRQIMKLDASRLESFGNNPDNYFIGVHSSPSSEMDRGNSLSRSSGVTLQEVPPTKVQSSYVPSATRTQGHGPSTGKSEILSSPQVAACEEVTYPNRNVSVGEPNAPAIPVTQTDEIMPDIATIPDIVAGNILDIPQENYMASETGGDGYMGPASFGVNMSLPLDFDSISTEPDIDDLLNNPHFWDDIVRTPVSEDIETNGPEVFYENEVQPTENGCEKSQHMDLLTEQMGLLSSDAKKN*	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g0348	506	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-1	6	486	-	-
	Vra7g0348	506	MobiDBLite	consensus disorder prediction	1	26	-	-
	Vra7g0348	506	MobiDBLite	consensus disorder prediction	295	348	-	-
	Vra7g0348	506	PRINTS	Heat shock factor (HSF) domain signature	28	51	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g0348	506	PRINTS	Heat shock factor (HSF) domain signature	66	78	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g0348	506	PRINTS	Heat shock factor (HSF) domain signature	79	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g0348	506	Coils	Coil	146	173	-	-
	Vra7g0348	506	Gene3D	-	20	118	IPR036388	-
	Vra7g0348	506	SMART	hsfneu3	24	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g0348	506	ProSitePatterns	HSF-type DNA-binding domain signature.	67	91	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vra7g0348	506	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	486	IPR027725	-
	Vra7g0348	506	SUPERFAMILY	"Winged helix" DNA-binding domain	23	117	IPR036390	-
	Vra7g0348	506	Pfam	HSF-type DNA-binding	28	117	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g0348	Vra-Chr7	5443598	5448909	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g0348	7	500	HSF	AT1G32330	52.849	1.64e-162	468

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vra7g0348		HSF_DNA-bind	7.4e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g0348	K09419		-	gmx:732544	822.772