Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0346 ATGAAACTCGTGGGAGGAAGAGTACGTGAATCTATGGAAGCTAGAAACGGGTTAGAATATTTGAAACATAAAAGGCTACAGCGAGCAAAATCTGCTACTGCCAGTGCCACAGCAAAAAACATTGCTAACATGATGAACAGAAGTGGAGGAGATGCTCTTAGTACTTCTGCATCCTATGGTATGAGGTTTCCTGGTGATGCAAGTAGCTTTTCCCGGCGGAAGGTGGATAAGTTTGACACAAGTGATCTGGCATGGACTGAGAAAATTCCAGAGTGTCCTGTGTATTATCCAACAAAGGAAGAATTTGATGATCCCTTGCTTTATTTACAAAGAATAGCTCCCGAAGCTTCTAAATATGGCATATGTAAGATTATTTCACCTTTGAGTGCTTCTGTTCCTGCTGGGGTTGTTTTAATGAGGGAGCAAGCAGGGTTCAAGTTTACAACTAGAGTGCAGCCCCTTCGTCTTGCCGAATGGGATACCGAAGACAAAGTGGTGTTTTTCATGAGTGGGATAGATTATACATTTCGTGATTTTGAAAAGATGGCAAACAAGTCTTTTGCACAAAGATATTGCAGTGCTGGATGTCTTCCTGCCTCATACTTGGAGAAAGAATTTTGGAGTGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGACGTTGATGGTAGTGCCTTTTCATCTTTGCCCACTGATCAACTTGGGAACAGCAAATGGAATTTGAAGAAATTTTCGTGGTTGCCCAAGTCTATTTTGCGGCTCTTGGAGACATCAATTCCGGGAGTAACTGAACCCATGCTATACATTGGAATGCTATTTAGCATGTTTGCTTGGCACGTGGAAGATCATTATTTATACAGCGTTAATTATCATCACTGTGGAGCATCAAAAACATGGTATGGCATTCCAGGTCACGCAGCATTGGAATTTGAAAGGGTGGTGAGACAACACGTGTATACTAATGATATTTTGTCAACTGGTGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGAAAAACAACTATGTTCCCACCAAATATTTTGTTGGAGCATGAAGTTCCTGTCTACAAGGCTGTTCAAAATCCAGGGGATTACGTAATAACTTTCCCCAGAGCATATCATGCTGGCTTTAGTCATGGCTTCAACTGCGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCTTTAGGGGCTATTGCAAGTCAAAGATATGCACTTCTTCACAGAGATCCTTTGCTTCCCCATGAAGAACTTTTATGCAAAGAAGCAATGCTTCTGTATGAAACATTAACACTTGAAGATTCAGACATTTCCCCTGAAGATTTGTTATCTCGTAATTGTGTTAAGATTTCTTTTGTTAATTTGATGCGCTTTCAACATTGTGCTCGTTGGCTGTTAATGAAATCAAGGGCATGTACAAGTGTTTCTTCACATTCTCAGGGTACAATTCTCTGTAGCCTCTGCAAACGGGACTGCTATATAGCTTATGTTGACTGTGAATGTCACCTGCATCCAGTATGCCTTCGCCATGATGTAGAATCTCTTGACTTCACCTGTGGGACCAAGCGCACACTTTATCTTAGGGAAGATACTCCAGACATGGAAGCTGCGGCCAAGAGATTTGAGCAGGAAGATGGAATTTTGAAAGAGATACTTAAGGAGATGAAAAGTGAAAAAAACATTTATTCATGCCCTTTGTCGAACATGTTCCAGATGGCTGAGGCTAATGGATATACACCGTATTGTGAGATGAAATTTGATTCTACTGCTAATATTTGTACCACCTCAAAGCTGTCAACAAACAATCAAGAGCATATGCGAAGTCAATTTGTTTCAAGACCTGAGGACGAGGTGCATGCTAACTTTAAATTAGGCAGTCCTGATTTTGAAGAGAATTGTGAAAGAATATCCAATAATGCTTCTGAGTCTTTCCAATCCTCTCTTCAGTATGAATGCCCTAATAAATCTATGGGTAATGTGCATAGATTAGAGAAGAAGCTTATTGTGGATAACAAGAGTGATGATTCTGATTCAGGGATTTTTAGGGTTAAGCGCCCTTCTTCTCTTAAGGCAGAGAGGAGAAATATAAGAGGTGCTACGTTTTCAACAAATTCTGGGCAGCAGGAACTATTGAAGAAAGAGCTTAACGAAGGAAGGAGTGTGAGCAAAAGAAAGGAAAGGAGTTACAAATATAGTGACGGTGTTAGTCATAAGGTAAGATATAAGAAGCGAAGTAATGAGGAAGTTAGTAGACGACGACGACATCATAGGTTGCTGCATTCCATAGAGGTTGCTCCAAAGCGCCTTAAAGCTCGGGATTGA 2334 0.4083 MKLVGGRVRESMEARNGLEYLKHKRLQRAKSATASATAKNIANMMNRSGGDALSTSASYGMRFPGDASSFSRRKVDKFDTSDLAWTEKIPECPVYYPTKEEFDDPLLYLQRIAPEASKYGICKIISPLSASVPAGVVLMREQAGFKFTTRVQPLRLAEWDTEDKVVFFMSGIDYTFRDFEKMANKSFAQRYCSAGCLPASYLEKEFWSEIGCGKMETVEYACDVDGSAFSSLPTDQLGNSKWNLKKFSWLPKSILRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSVNYHHCGASKTWYGIPGHAALEFERVVRQHVYTNDILSTGGEDGAFDVLLGKTTMFPPNILLEHEVPVYKAVQNPGDYVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAIASQRYALLHRDPLLPHEELLCKEAMLLYETLTLEDSDISPEDLLSRNCVKISFVNLMRFQHCARWLLMKSRACTSVSSHSQGTILCSLCKRDCYIAYVDCECHLHPVCLRHDVESLDFTCGTKRTLYLREDTPDMEAAAKRFEQEDGILKEILKEMKSEKNIYSCPLSNMFQMAEANGYTPYCEMKFDSTANICTTSKLSTNNQEHMRSQFVSRPEDEVHANFKLGSPDFEENCERISNNASESFQSSLQYECPNKSMGNVHRLEKKLIVDNKSDDSDSGIFRVKRPSSLKAERRNIRGATFSTNSGQQELLKKELNEGRSVSKRKERSYKYSDGVSHKVRYKKRSNEEVSRRRRHHRLLHSIEVAPKRLKARD* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0346 777 ProSiteProfiles JmjN domain profile. 92 133 IPR003349 -
Vra7g0346 777 SUPERFAMILY Clavaminate synthase-like 170 426 - -
Vra7g0346 777 SMART JmjN_1 91 132 IPR003349 -
Vra7g0346 777 SMART cupin_9 236 409 IPR003347 -
Vra7g0346 777 MobiDBLite consensus disorder prediction 721 758 - -
Vra7g0346 777 Pfam C5HC2 zinc finger 489 540 IPR004198 -
Vra7g0346 777 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 62 776 - -
Vra7g0346 777 PANTHER LYSINE-SPECIFIC DEMETHYLASE 62 776 - -
Vra7g0346 777 MobiDBLite consensus disorder prediction 721 750 - -
Vra7g0346 777 ProSiteProfiles JmjC domain profile. 239 409 IPR003347 -
Vra7g0346 777 Gene3D Cupin 85 414 - -
Vra7g0346 777 Pfam JmjC domain, hydroxylase 269 392 IPR003347 -
Vra7g0346 777 Pfam jmjN domain 93 125 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0346 Vra-Chr7 5416325 5429119 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0346 89 559 JUMONJI Transcription Factor Family AT2G34880 31.801 2.04e-66 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra7g0346 JmjC 2.3e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0346 - - vra:106765852 1527.69