Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0345 ATGGAACTATTCCCAGTACAGCCAGATTTGTCCTTGAAAATTACCCCTCCAAACACCAAATCCACATCAAGTAATTGGAACAAGAGAACCAAAGAAGAGGAGATGGATTTGGGGTTTTGGAAGAGAGCTTTGGAATCAAAAACACTCAAAACAGACCTCTCCCTCTCTAATCCAAGGGTTTTTTCTTCTTCTTCTTCAAACACCAACACCCTTAACCCCAACCATTTCCATAACAACACTGCTAATACTATCCAACAAAACCATTTCTTTCACCACCAAGACCTACCCATAAGAGGAATCCCACTCTACCAAAACCCTCCTTTCTCATTTCCTCCCTCTTCTTCAACCCCTTTCCTTAACTCACGCTTCCCTCCCAAGCGTAACATCAGAGCTCCTCGGATGCGTTGGACCACTGCACTCCATGCTCGCTTCGTCCATGTCGTTCAACTTTTGGGTGGCCATGAAAGGGCTACACCCAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAATCTCACTTGCAGATGTACCGAACAGTGAAAACTACTGATAGAGCTGCGGCATCATCGGGGCAATCTGATACTTATGATAATGGGTGTTCTGGAGATACTTCTGAAGACTTGGTGTTTGATAGAAACTCTCCAAGGAGGTCTGATCTATCTATTAGGCAGGCAAGAACAAGTGTTAATCAAGATATTGGAAATGGTAGCCTTTGGAACAACTCTTCAAGGCAAGCCTTGTTGCATGGCAAGCCAAACCTTCATTCCATTCTCAACCTGCCTTCTGTTGAGGGAATGGATCCAAAGGTCCAAAGCAATGAAATATCAGATGGAAACTCATCCTCAGACATTGCAGAATCAAATGGCAAGAAGCCAAATTTGGATTTGGAGTTCACCTTAGGTCGATCACTTTGA 933 0.4352 MELFPVQPDLSLKITPPNTKSTSSNWNKRTKEEEMDLGFWKRALESKTLKTDLSLSNPRVFSSSSSNTNTLNPNHFHNNTANTIQQNHFFHHQDLPIRGIPLYQNPPFSFPPSSSTPFLNSRFPPKRNIRAPRMRWTTALHARFVHVVQLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDTYDNGCSGDTSEDLVFDRNSPRRSDLSIRQARTSVNQDIGNGSLWNNSSRQALLHGKPNLHSILNLPSVEGMDPKVQSNEISDGNSSSDIAESNGKKPNLDLEFTLGRSL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0345 310 Pfam Myb-like DNA-binding domain 133 184 IPR001005 -
Vra7g0345 310 MobiDBLite consensus disorder prediction 189 226 - -
Vra7g0345 310 MobiDBLite consensus disorder prediction 271 299 - -
Vra7g0345 310 SUPERFAMILY Homeodomain-like 129 185 IPR009057 -
Vra7g0345 310 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 108 - -
Vra7g0345 310 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 120 307 - -
Vra7g0345 310 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 108 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra7g0345 310 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 120 307 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vra7g0345 310 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 185 IPR006447 GO:0003677
Vra7g0345 310 MobiDBLite consensus disorder prediction 189 208 - -
Vra7g0345 310 Gene3D - 131 188 - -
Vra7g0345 310 MobiDBLite consensus disorder prediction 278 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0345 Vra-Chr7 5395082 5399121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0345 1 307 G2-like Transcription Factor Family AT4G17695 38.506 1.00e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra7g0345 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0345 - - pvu:PHAVU_003G283000g 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1044 11 9612064 9617329 Vra7g0345 7 5395082 5399121 PCT