Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0344 ATGGAGGATGAATCTAATCCCACCCTCCATGTTGGGACTACTGCATTTCCACTTCCCCAAAAAGGCAGGAGGGAAGACGGGGTTGAGCAAGAGAATCAAGGAAGTCCAAAAAGGCAGAAGAGAGATGAGGTTGCTGAGGAGCTCAAGAATGAGTTTCAGGAGAATATCAATATCTATGAAGGTGATAACTCTGAAGAAAGATATGAAGAAACAGAAGAGAAAACGATGGAAGTTTTGATGGACACCACATTAGATGCTCAAGAATGTGACTCAAAAAATGTGGAAAATGATTCTTCTAGTGATAGTTCAGATGACAACAACCATGATGACGATAACTCTGATTTTATTNACGAGCCACATATGACTACAAATCCTGTGAAAAGTTCAGAGAACAGTGAGGAAGAAATTGAGGAAAATGCCTCTAAAACTCCGCAAGTAAATCTTGAAATGCTAACTACTTTGAAAGAACGAAGTGCTGGATCAAAGACAATTTATACTAAGAACTTATCATATAGTGTGGAACGTGCTGATCTGGAAGATCTTTTCAAAGAGTGTGGAGAAATTGTTGATGTTCGTCTACATACGGATGATGAAGGGAGGTTTAGAGGCTTTGGTCATGTTGAGTTTGCGACACAAGAAGCAGCGCTAAAAGCACTTAAGTTAAATAATACAGAATTATTGAGATGTCGCATCAGAGTTGGTGTAGCTCGAGAAAGGCAAAAATATACCCCCAACAGAAGTTTTCATGTTAATTATTTTAGCAACAAATATCACGGTAGTGAAAGAATTCAGCCGGTGAAATGTTCAGAGATTTCAGAAGATTGTGAGCAAGAAACTGAGGAAAAAGACTCCAAAGCTGTTCAGACAATTCCAAAAGATCAAGCTACTTGGAAGGAACAAAAAGCTACTTCGAAGACAATATATGCTAGAAATTTGTCTTATAGTGTGGAGAGGGATGATATGGAAATTCTTTTCAAAGAGTGTGGAGAAATTGTTGATATTCGTCTACAAAGAGATCATAAAGGGAGGTCAAGAGGCTTTGGGCATGTTCAGTTTGCAACTACAGAAGCTGCACAAAAGGCTCTTGGGTTGGATAATAAAAAATGGTACGGACGATGCATCAGTGTTGGCATAGCTCAAGAAAGGAGTGAATATGCCTCCAATAGAAGTTTTAGCAACTGGAGCAATTCATTCAATAAGCGCGAAAGAATCGATCCCATCAAAAGGACATGGAGTTTGGAGTCCCGTGAGGAAGATATTGAGGGAAAAGCCGTAAAAGATCCTTGGAAAACTTCTAGATTGTTGGCTACTCTGAAAGAAGAAAATGCTTCATCAAAGACAATATATGTCAAAAACTTGTCATTCAGAGTGGAAAAGGCTGATTTGGAAAATTTTTTCAAAGAATGTGGAGAAATCGTCGAAGTTAGGCTACACAGAGATAATGAGGGGAGGTTAAAAGGCTTTGGACATATTACGTTTGCAACAGCAGAAGCTGCACTAAAACCTAAAACGCTAGCTACTCTGAAAGAACAAAATGCTGCACCAAAGACGATATTTGTTGGAAACTTGTCACATGAAGTGGAACAGGCTGATGTGGAAAATCTTTTCAAAGAATGTGGAGGAATTGCTTATCTCCATCCACATACAGATCATGAGGGGAGGCCTAAAGGCTTTGTACATGTTGAGTTTTCAACGGCTGAAGCAACACAAAAGGCTCTTAAGTTGAATCACACAGAATTGTTTGGACGTATCATCACAGTTGAATTAGCTCGAGAAAAAAATGATAACTACAGTAGAAGCAACAACTCGTTCCAGAAGGGTGAAAGAATTCAATCTCTAACTGTATTTGTGAAGGGTTTTGATACTTCACTCGAGGAAGAAGAGATAAAAGCTAGCCTGGAAGAGCATTTTGGTTCTTGTGGAGAGATTACCAGGATATTGATTCCGAAAATTCATGATTCTGGTGCATTTAAGGGGTTTGCTCTGATAGAATTCAAGGATGTTGAGAGTGTGAAGAGAGCTGTAGATCTTGATCAAACTGAGATGGGAGGTTATATGTTGTTAGTTCAAAAAGCAAGGCCTCGACGTGGTGGAAATGGCTCTAAAAATGGTGGTGGATGGCATTCTGGTGCTGGCTGGCATTCTTTATTTTTCTCATGA 2160 0.3931 MEDESNPTLHVGTTAFPLPQKGRREDGVEQENQGSPKRQKRDEVAEELKNEFQENINIYEGDNSEERYEETEEKTMEVLMDTTLDAQECDSKNVENDSSSDSSDDNNHDDDNSDFIXEPHMTTNPVKSSENSEEEIEENASKTPQVNLEMLTTLKERSAGSKTIYTKNLSYSVERADLEDLFKECGEIVDVRLHTDDEGRFRGFGHVEFATQEAALKALKLNNTELLRCRIRVGVARERQKYTPNRSFHVNYFSNKYHGSERIQPVKCSEISEDCEQETEEKDSKAVQTIPKDQATWKEQKATSKTIYARNLSYSVERDDMEILFKECGEIVDIRLQRDHKGRSRGFGHVQFATTEAAQKALGLDNKKWYGRCISVGIAQERSEYASNRSFSNWSNSFNKRERIDPIKRTWSLESREEDIEGKAVKDPWKTSRLLATLKEENASSKTIYVKNLSFRVEKADLENFFKECGEIVEVRLHRDNEGRLKGFGHITFATAEAALKPKTLATLKEQNAAPKTIFVGNLSHEVEQADVENLFKECGGIAYLHPHTDHEGRPKGFVHVEFSTAEATQKALKLNHTELFGRIITVELAREKNDNYSRSNNSFQKGERIQSLTVFVKGFDTSLEEEEIKASLEEHFGSCGEITRILIPKIHDSGAFKGFALIEFKDVESVKRAVDLDQTEMGGYMLLVQKARPRRGGNGSKNGGGWHSGAGWHSLFFS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0344 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 610 714 - -
Vra7g0344 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 420 501 - -
Vra7g0344 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 66 395 - -
Vra7g0344 719 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 501 592 - -
Vra7g0344 719 MobiDBLite consensus disorder prediction 88 116 - -
Vra7g0344 719 Gene3D - 261 391 IPR012677 -
Vra7g0344 719 SUPERFAMILY RNA-binding domain, RBD 155 259 IPR035979 GO:0003676
Vra7g0344 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 613 694 IPR000504 GO:0003723
Vra7g0344 719 MobiDBLite consensus disorder prediction 1 144 - -
Vra7g0344 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 525 IPR000504 GO:0003723
Vra7g0344 719 CDD RRM1_NUCLs 163 239 IPR034349 -
Vra7g0344 719 MobiDBLite consensus disorder prediction 60 79 - -
Vra7g0344 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 381 IPR000504 GO:0003723
Vra7g0344 719 SUPERFAMILY RNA-binding domain, RBD 440 501 IPR035979 GO:0003676
Vra7g0344 719 SUPERFAMILY RNA-binding domain, RBD 609 710 IPR035979 GO:0003676
Vra7g0344 719 Gene3D - 609 713 IPR012677 -
Vra7g0344 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 516 592 IPR000504 GO:0003723
Vra7g0344 719 SMART rrm1_1 517 588 IPR000504 GO:0003723
Vra7g0344 719 SMART rrm1_1 614 690 IPR000504 GO:0003723
Vra7g0344 719 SMART rrm1_1 163 234 IPR000504 GO:0003723
Vra7g0344 719 SMART rrm1_1 447 516 IPR000504 GO:0003723
Vra7g0344 719 SMART rrm1_1 306 377 IPR000504 GO:0003723
Vra7g0344 719 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 610 714 - -
Vra7g0344 719 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 420 501 - -
Vra7g0344 719 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 501 592 - -
Vra7g0344 719 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 66 395 - -
Vra7g0344 719 SUPERFAMILY RNA-binding domain, RBD 510 604 IPR035979 GO:0003676
Vra7g0344 719 Gene3D - 436 505 IPR012677 -
Vra7g0344 719 Gene3D - 123 260 IPR012677 -
Vra7g0344 719 Gene3D - 506 608 IPR012677 -
Vra7g0344 719 SUPERFAMILY RNA-binding domain, RBD 289 394 IPR035979 GO:0003676
Vra7g0344 719 MobiDBLite consensus disorder prediction 22 50 - -
Vra7g0344 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 615 685 IPR000504 GO:0003723
Vra7g0344 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 501 IPR000504 GO:0003723
Vra7g0344 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 518 585 IPR000504 GO:0003723
Vra7g0344 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 232 IPR000504 GO:0003723
Vra7g0344 719 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 374 IPR000504 GO:0003723
Vra7g0344 719 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0344 Vra-Chr7 5345801 5367940 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0344 448 696 Eukaryotic Initiation Factors Gene Family AT2G36660 25.357 7.28e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0344 - K11294 pvu:PHAVU_003G282900g 811.216