Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0338 ATGGATTCCACTCTCTCTTTCCACACTTCAACTAACAATGCCATCTCACAACCGCAACAACCGCCGTCTCCTCCGCCGCCTCACAACGCACATTCGCAACCCCCACTCTTAGTTCCCAAACCCGAACCCTTCTGGGCCTCTGCCCATGACGATATTGGAGACGAACTCGACCTATTCACTGAGTTCAACCGAGTTACCGAGTTGTTCCACCTTGCCTTCGGAGCCACCAATGTCGTCGTTCCCCCTTACTCCTTCGGACCTCAACCTGCTGCACCCGCATGCTCCGACCCGCTTCCTGCTGCGGATGTCCATTCGGCGGTTCAGGAACACCCGAATTCGTCGTCCTCCGCCCCCGACGCCTCCAGAGCGATCGTCCCCATGGAGGACCTCACGGTGAGCGTTCCGCCGCGGCGGAAGCAGAGCCGGCAGAAGGAGCTGGTTCGGGTAATGGGTATGTCGGTGAGGGAACAGGCGCAGCTGCGGGAGACGGTGAGGCGCACGCGCTTGGTGTACGACTCGCTGCGCGTGTACACCGCTGTGGAGGAAGAGAGGCGGGTGGCCGCCTTGGCGGCGGCGGCAGCGGCGAGGGAGGCTGCGAGGGAGGCTGGGGTCAAGGAGGAGCAGGAAGAAGAGAAAGTGGTGGAGGGCCGGAGTCGACGTCTCCGCGGGGACCTGCGAGCTGCTGGACTGATGCGGGAGCGTGGACTGTGGCTGAACCGCGAGCAGCGAATCGTTGGGGCGATCCCTGGGATTTTGGTGGGGGATTTGTTCCTTTTCAGGATGGAGTTGTGTGTGCTTGGGTTGCACGGTCAGATACAGGCTGGCATTGATTATCTTCCTGCAAGTATGAGCTCCAGTGGGGAGCCTATAGCCACCAGTGTGATTGTTTCTGGGGGTTATGAGGATGATTCTGAGGATGGTGAGGATATATTCTACACTGGTCATGGAGGGCAGGGGAAAAATTCGTCTAAGCAGGTTGCTGACCAGAAGCTGGAGTCAGGGAACCTTGCATTGGAAAGGAGTATGCATTATGGTGTGGAGGTGAGGGTTATTCGTGGGATGAGGTATGAGGGGAGTGCTTCTGCTTCTGGTAAGGTGTATGTGTATGAAGGAGTGTATAAGATTACTGATTGCCAGTTTGTTGAGGGGAAGTCTGGTTTTGGGGTTTACAAGTTTAGGCTTTCCAGGATTGAGGGGCAGGCTAAGACGGGAAGTGCTATTTTGAAGGAAGCTAGGGATATTAGGATGAATGTAAAGGATGCGAATAATGTGCGTTGTCTTTCTGCTGATATGTCCAACAAGAAGGAGAATGTTCCTGTTCGCCTTTTTAACGACATAGATGATGATCGGGATCCTCTTAACTATGAGTATCTTGCCAAGACTAGTTTTCCACAGTTTGTGTTTCATCAGAGTGGGAATGTTACTGGTTGTGACTGTGTGAATGGTTGTGGTGATGGATGCTTTTGTGCTAAAAAAAATGGGGGTGATTTTCCTTACACTCTGCAGGGACATCTTGTGAAAGGGAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGTTCTTGTACTTCTCAGTGTCGTAATCGTGTTTCGCAGAAGGGACTGAAATATAGGTTGGAAGTGTTTAGGTCCCTGCAGACATCTTGGGGTGTTAGGTCTCTGGACCTTATTCAAGCCGGTACTTTTATATGTGAGTTTTCTGGGGTTGTTTTGACAAGGGAGCAGGCGCAACTCGTTGCAATCAATGGTGACTCTTCGATATATCCCAATAGGTTTTCAAAAAGATGGGCGGAATGGGGGGATTTGTCTCAAGTAGACCCAAAATATGTGCGTCCATCATATCCATCTATTCCTCCTTTAGATTTTTCTCTGAATGTGTCGACAATGAGGAATGTTGCTTGCTATATGAGCCACAGTTCATCTCCAAATGTTTTGGTTCAATTTGTTCTGTATGATCACAACAATTTGATGTTCCCACACCTTATGCTATTTGCAATGGAGAATATCCCTCCCATGAGAGAGCTCAGCCTTGATTACGGCGTAGCTGATGAGTGGACAGGGAAGCTCTCTATATGTAACTGA 2079 0.5089 MDSTLSFHTSTNNAISQPQQPPSPPPPHNAHSQPPLLVPKPEPFWASAHDDIGDELDLFTEFNRVTELFHLAFGATNVVVPPYSFGPQPAAPACSDPLPAADVHSAVQEHPNSSSSAPDASRAIVPMEDLTVSVPPRRKQSRQKELVRVMGMSVREQAQLRETVRRTRLVYDSLRVYTAVEEERRVAALAAAAAAREAAREAGVKEEQEEEKVVEGRSRRLRGDLRAAGLMRERGLWLNREQRIVGAIPGILVGDLFLFRMELCVLGLHGQIQAGIDYLPASMSSSGEPIATSVIVSGGYEDDSEDGEDIFYTGHGGQGKNSSKQVADQKLESGNLALERSMHYGVEVRVIRGMRYEGSASASGKVYVYEGVYKITDCQFVEGKSGFGVYKFRLSRIEGQAKTGSAILKEARDIRMNVKDANNVRCLSADMSNKKENVPVRLFNDIDDDRDPLNYEYLAKTSFPQFVFHQSGNVTGCDCVNGCGDGCFCAKKNGGDFPYTLQGHLVKGKPLIFECGPFCSCTSQCRNRVSQKGLKYRLEVFRSLQTSWGVRSLDLIQAGTFICEFSGVVLTREQAQLVAINGDSSIYPNRFSKRWAEWGDLSQVDPKYVRPSYPSIPPLDFSLNVSTMRNVACYMSHSSSPNVLVQFVLYDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICN* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0338 692 MobiDBLite consensus disorder prediction 18 41 - -
Vra7g0338 692 ProSiteProfiles SET domain profile. 536 679 IPR001214 GO:0005515
Vra7g0338 692 MobiDBLite consensus disorder prediction 1 43 - -
Vra7g0338 692 SUPERFAMILY PUA domain-like 227 407 IPR015947 -
Vra7g0338 692 ProSiteProfiles YDG domain profile. 246 396 IPR003105 -
Vra7g0338 692 Pfam SAD/SRA domain 245 400 IPR003105 -
Vra7g0338 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 33 689 - -
Vra7g0338 692 SMART set_7 536 685 IPR001214 GO:0005515
Vra7g0338 692 SMART preset_2 428 520 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra7g0338 692 SMART G9a_1 241 400 IPR003105 -
Vra7g0338 692 Pfam Pre-SET motif 431 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra7g0338 692 Gene3D SET domain 405 692 IPR046341 -
Vra7g0338 692 Pfam SET domain 548 679 IPR001214 GO:0005515
Vra7g0338 692 ProSiteProfiles Pre-SET domain profile. 475 533 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Vra7g0338 692 MobiDBLite consensus disorder prediction 1 17 - -
Vra7g0338 692 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 33 689 - -
Vra7g0338 692 Gene3D - 243 404 IPR036987 -
Vra7g0338 692 SUPERFAMILY SET domain 437 690 IPR046341 -
Vra7g0338 692 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 63 692 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0338 Vra-Chr7 5251264 5256142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0338 111 681 Su(var)3-9 homologs AT5G04940 37.479 2.12e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra7g0338 SAD_SRA 3.3e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0338 K11420 - gmx:100785015 947.577