Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0329 ATGTCAACCCCATTACCATTATCACCATCACCGTCACCGTCACCGGTGTCATTCACCACCGCCCCGCCACCACAGTTATCTTCTCCGACACTACCTAATTCAACTTCACTATCACCATTATTCTCACCATTACTCCCACCATTACCATCTCAGTCCTTACCTCCGGCTTCCTCTCCACCGGCACCACCACCACTGTCCCTATCACTATCACCACAATCGTTGAGTTTGCCACCGGCGTCAGTTTCTTCCCCTCCGCCACCTCCTCAGAGTTCTTCTCCTTCTCCAGCAGCATCTGCTGCACCTGTAAGTAGTAGTGCACCTCCTCCACCTTCTAGGACAAGTCCTTTAGATTCTCATTCTACTCCATCACACACTTTTGCATTGGCTCCACCACCTCCATCAGCAAAAGATTCTCACCAACGAAGCAGTGGTGGCACTGGTGCAGTGGCTTTTGTTGGTGTAGTGACAGCAATTGTATTGTTTGGGTTCATTGGCATTGCTATCTGGTGCCTGAGGAGGCAAAAGAAAAGGATTTCTAAGACTGGTGGCTATGACTTCCCATCCCCTCTTGGCTCAACATCTGAGTCAGATTTGTCCTTGCTTAAGATCCGTTCTTCAGCTCATCGTTTGCAAAGAGCTTCTGGCGGTAATACAGCATCAGGACTGGGAAACTCAAGGTCATTCTTTGCATATGAAGAACTAATGAAGGCCACAAACAATTTTTCTACTCAAAATCTTTTGGGTGAGGGAGGGTTTGGTTTTGTGTATAAAGGATCACTTCCAGATGGGAGAGAGGTAGCAGTTAAGCAACTACAGATTGAAGGAAGTCAAGGAAAGAGAGAATTCAAAGCTGAAGTTGAAATTATTAGCCGCATACATCATCGTTATTTAGTTTCCTTGGTAGGATACTGCATTTCAGAGAACAAAAGACTACTTGTATATGACTATGTCCCCAACAGTACCCTTTATTTTCATCTTCATGGGGAAGGTATGCCAGTGCTGGAGTGGACAAACCGTGTTAAAATTGCGGCTGGAGCAGCCAAAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGGGATATCAAGTCAGCAAACATACTTTTAGACTACAACTTTGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAGATTAGCAGTTGATGCAAATTCACATGTAACCACACACGTGGTGGGAACTTTTGGATATGTTGCACCTGAATATGTATCAAGTGGTAAATTGACAGAGAAGTCAGATGTATACTCCTTCGGAGTCATGCTTCTGGAGCTCATTACTGGAAGAAAGCCAGTGGATGTATCTCAACCAATGGGTGAAGAGAGTCTAGTTGAATGGGCTCGACCCTTGCTAAATGATGCACTTGAGAGTGAGGAATTTGAGATTTTGACAGATCCAAAGCTAGGAAAAAAGTACGTTGAAAGTGAAATGATTTGCATGGTTGAAGTTGCTGCTGCTTGCGTGAGACATTCATCTGCCAGAAGACCTCGGATGGGACAGGTTGTTAGAGCTTTTGATGGTTTAGCTATGTGTGATCTTTCAAATGGAATGAGAGTTGGGGATTCTACGCAGCAATCCGCAGAAATAAGATTATTACGTAGAATGGCATTTGGTTACAATTCAGAATTTTTGAGCCACACAAGTTTGAATGAGTAA 1683 0.4433 MSTPLPLSPSPSPSPVSFTTAPPPQLSSPTLPNSTSLSPLFSPLLPPLPSQSLPPASSPPAPPPLSLSLSPQSLSLPPASVSSPPPPPQSSSPSPAASAAPVSSSAPPPPSRTSPLDSHSTPSHTFALAPPPPSAKDSHQRSSGGTGAVAFVGVVTAIVLFGFIGIAIWCLRRQKKRISKTGGYDFPSPLGSTSESDLSLLKIRSSAHRLQRASGGNTASGLGNSRSFFAYEELMKATNNFSTQNLLGEGGFGFVYKGSLPDGREVAVKQLQIEGSQGKREFKAEVEIISRIHHRYLVSLVGYCISENKRLLVYDYVPNSTLYFHLHGEGMPVLEWTNRVKIAAGAAKGIAYLHEDCNPRIIHRDIKSANILLDYNFEARVSDFGLARLAVDANSHVTTHVVGTFGYVAPEYVSSGKLTEKSDVYSFGVMLLELITGRKPVDVSQPMGEESLVEWARPLLNDALESEEFEILTDPKLGKKYVESEMICMVEVAAACVRHSSARRPRMGQVVRAFDGLAMCDLSNGMRVGDSTQQSAEIRLLRRMAFGYNSEFLSHTSLNE* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0329 560 Gene3D Transferase(Phosphotransferase) domain 1 317 528 - -
Vra7g0329 560 MobiDBLite consensus disorder prediction 78 94 - -
Vra7g0329 560 Gene3D Phosphorylase Kinase; domain 1 203 316 - -
Vra7g0329 560 SUPERFAMILY Protein kinase-like (PK-like) 224 512 IPR011009 -
Vra7g0329 560 PANTHER BNACNNG34790D PROTEIN 30 549 - -
Vra7g0329 560 SMART serkin_6 241 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0329 560 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 30 549 - -
Vra7g0329 560 MobiDBLite consensus disorder prediction 42 67 - -
Vra7g0329 560 ProSitePatterns Protein kinases ATP-binding region signature. 247 269 IPR017441 GO:0005524
Vra7g0329 560 CDD STKc_IRAK 247 517 - -
Vra7g0329 560 ProSiteProfiles Protein kinase domain profile. 241 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0329 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 361 373 IPR008271 GO:0004672|GO:0006468
Vra7g0329 560 MobiDBLite consensus disorder prediction 1 144 - -
Vra7g0329 560 Pfam Protein kinase domain 242 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0329 560 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0329 Vra-Chr7 5128072 5131729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0329 120 510 Trihelix Transcription Factor Family AT1G68690 64.810 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vra7g0329 Pkinase 9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0329 - - gmx:100799296 710.679