Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0325 ATGGAAAATGCTAATGGTCCTAACAGCATCAAGCTTAAAGGAAATTCTGATGAGGAAGTATTTCAAGTGAATGAAGAGGTGGAGGTGCGGCGTGTAGAGGAGGGGTTCCTAGGATCATGGCACCCTGGGATAGTTATCAAGTGTGGAAAGGTGAAGTGCTTTGTCAGATACAAGAATGTTCTAAAAAGTGACGGTTCGGGTTATCTTGTAACTGCAGTGAGGGTTTCAAAAGCATCGGAATCTTCCAAGTATAGCATGCGGGGGTTCATTCGGCCACCGCCACCTTGGGTTGAGTTTGGGAGATTTAACCTTAACTATGGTTTGTGCGTGGATGTAAACTGTCAGGGAGCTTGGTGGGAAGGAGTTATACTTGATCAGTGCGATGGAATGCTGAAAAGGAGCGTGTTTTTTCCAGATTTGGGTGATGAAATGCAGATTGAAATTCGTCAACTGCGGATTACTCAGGACTGGAATGAAGTTACACGACAATGGGAACTAAGAGGAAACTGGGTGTTTCTTGAATTGCTGGAGGAGTATCAGAATGGATCATTTGTTGGAGTTTCAGCTAAACAAATGTGGTATGATGTACTGGTAAAAAAGAGATTTGGCATGAGGGGAGAGTGGGCATATAATCAGAAAGAATTGTACAGGGAAGCAGTGTTAGGTGTAGTTGATGACTACTTAACTCTTAGAGTGAACAAAGTTTTCTCAGTTTTAGACTTCCCACCAGAGCAAGAATCAGTTGAACCAATGGCCAGTATTGATTTGAACATGGCCTTGTCTGATAGAGATAATTTTGTCCAGAAAGAAGCTGCTCCTCTTGTTGAAGAGGTTTTACCTGAGTTTGAAATAGAAATTGACCTTGAAGGTGATCCTGAAGTAGATTCTGGTGAGAGATGTGAAAACTCAAGGGGTTCAAAGGCCAAAATATCTAAGAGTCAAAGCAATAGATTGGCTCCACAAGGATCAGGGAAGAGGGTGACAAAGGCGTCTGCTGCCTCTAGTCTTTTACCTCCGGATAAACCTCTAACTATTCTGTCTTGGTTGATGGACAACAAGATGGTGTTTCCAAGATCTACCGTATATTATTACAATGAAAAAGCATGGTACCATGCAGTTTCAAGTTGGACTAGAGGGAAAGTAACTCGCAGTGGAATCAAGTGTTACTGTTGTAACATAGTTTACAGTTTTGTTGGGTTTGAAAATCATGCTAGTGGAGTGAATACCTGCACACCATCTGCTTGTATTTTTTTGAAAGATGGTAAATCACTCTTAGAATGCCAAATGGAAATAATGCAAAATCTGGTGAGAAGAGAAAGTAGCGAAAAACCAAGCATTAATTTCCCTTTGGAAGAGAATGACTTGATTTGTTCGCTTTGCCTCTATGGTGGTGAACTTATTTTATGTGATCAATGTCCATCTTCATTTCATATGACGTGTCTTGGGTTGGAGCATATCCCTGATGGTCAATGGCTTTGCCCACAATGTCGTTGTGGTATTTGTCGCCAAAGCAAACTAGACGAAGATGAGGATGGCCATGCTGCCCTTACTTGCGTACAGTGTGAACATAAATACCATGTTAGGTGCCTGGAAAATGGAGGCATAGATTTATCAAGATGTTCAGAAAACTGGTTCTGTGGAAAAAGCTGCGAAAAGATACACAATGGCCTTCATGAGCTATTAGGAAAGCCAGTTTTAGTGGGTGTGGACAATCTAACATGGACATTGGTGAAGTTTATTGAGCCTGGATGTGATGATGTTGGTAGAATAAGACATGACAACTCAGTAGCAGAAAATTACAGCAAACTCAATCTTGCTCTTGCGGTGATGCATGAATGTTTTGAGTCCCTAAAACAAAGTTTATCTAGCAGAGATATCATTGAAGATGTTATATTCGGCAGAAGGTCAGAGCTAAGGCGATTAAATTTCCAGGGTTTCTATACTGTACTACTTGAGAGAAATGAAGAAGTGGTTTCTGTGGCAACTGTTAGGGTCCACGGGGAGAAGGTAGCAGAAGTACCTTTTGTTGGTACAAGATTACACTACCGTCGACATGGATTTTGTCGCATTCTGATGAGTGGTCTTGAACAGTTGCTGATGCAATTAGGTGTGGGGAGGCTTGTTTTGCCGGCTGTTCCTAGTACGCTGAAGACATGGACTGACTCTTTTGGTTTTGCAAAGATGACCGTTTCTGAGAGGTCTAAATTTCTGGACAACACCTTCTTAAATTTTGAGGGTAGCATCATGTGCCATAAGCTGTTGATCACGATTCCACCTCCATATTCTGGCTTCTTAATACCTAATTTTGAGAAGTCACATTCCAGATGTCATGTTTTACCTCAATATACCGTTGACCTCAATCAGTCTATTTCAGTATCAGAAGGAGGGATGATATATCAGCAAACGGGGAATACTTGTTCAGGCAACAACAATGGCGACAACAATGATTTTGTTACTAGTGTTACTGTTCCAGTCAACAACATGGAGAAAGAAGTTCCTGGTGATCAACAGTATCTTAATGGAAGCAGCTCACAGTTGGTTCATGAAAAACAAGGTGACGAGTACAACAGTCAAAAGAAAGTAAGGTATCTGCATAAGGGGAGCTTCTGA 2610 0.4142 MENANGPNSIKLKGNSDEEVFQVNEEVEVRRVEEGFLGSWHPGIVIKCGKVKCFVRYKNVLKSDGSGYLVTAVRVSKASESSKYSMRGFIRPPPPWVEFGRFNLNYGLCVDVNCQGAWWEGVILDQCDGMLKRSVFFPDLGDEMQIEIRQLRITQDWNEVTRQWELRGNWVFLELLEEYQNGSFVGVSAKQMWYDVLVKKRFGMRGEWAYNQKELYREAVLGVVDDYLTLRVNKVFSVLDFPPEQESVEPMASIDLNMALSDRDNFVQKEAAPLVEEVLPEFEIEIDLEGDPEVDSGERCENSRGSKAKISKSQSNRLAPQGSGKRVTKASAASSLLPPDKPLTILSWLMDNKMVFPRSTVYYYNEKAWYHAVSSWTRGKVTRSGIKCYCCNIVYSFVGFENHASGVNTCTPSACIFLKDGKSLLECQMEIMQNLVRRESSEKPSINFPLEENDLICSLCLYGGELILCDQCPSSFHMTCLGLEHIPDGQWLCPQCRCGICRQSKLDEDEDGHAALTCVQCEHKYHVRCLENGGIDLSRCSENWFCGKSCEKIHNGLHELLGKPVLVGVDNLTWTLVKFIEPGCDDVGRIRHDNSVAENYSKLNLALAVMHECFESLKQSLSSRDIIEDVIFGRRSELRRLNFQGFYTVLLERNEEVVSVATVRVHGEKVAEVPFVGTRLHYRRHGFCRILMSGLEQLLMQLGVGRLVLPAVPSTLKTWTDSFGFAKMTVSERSKFLDNTFLNFEGSIMCHKLLITIPPPYSGFLIPNFEKSHSRCHVLPQYTVDLNQSISVSEGGMIYQQTGNTCSGNNNGDNNDFVTSVTVPVNNMEKEVPGDQQYLNGSSSQLVHEKQGDEYNSQKKVRYLHKGSF* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0325 869 CDD NAT_SF 649 709 - -
Vra7g0325 869 SMART agenet_At_2 102 159 IPR014002 -
Vra7g0325 869 SMART agenet_At_2 19 98 IPR014002 -
Vra7g0325 869 SUPERFAMILY FYVE/PHD zinc finger 435 497 IPR011011 -
Vra7g0325 869 Pfam Agenet domain 25 95 IPR008395 -
Vra7g0325 869 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 598 743 IPR000182 GO:0016407
Vra7g0325 869 Pfam Tify domain binding domain 379 430 IPR032308 -
Vra7g0325 869 PANTHER PHD ZINC FINGER PROTEIN 298 764 - -
Vra7g0325 869 PANTHER PHD ZINC FINGER PROTEIN 25 246 - -
Vra7g0325 869 Pfam PHD-finger 456 498 IPR019787 -
Vra7g0325 869 ProSiteProfiles Zinc finger PHD-type profile. 454 499 IPR019787 -
Vra7g0325 869 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 25 246 - -
Vra7g0325 869 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 298 764 - -
Vra7g0325 869 Gene3D - 586 729 - -
Vra7g0325 869 MobiDBLite consensus disorder prediction 292 333 - -
Vra7g0325 869 SMART PHD_3 498 550 IPR001965 -
Vra7g0325 869 SMART PHD_3 456 497 IPR001965 -
Vra7g0325 869 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 644 725 IPR016181 -
Vra7g0325 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 498 IPR013083 -
Vra7g0325 869 MobiDBLite consensus disorder prediction 307 330 - -
Vra7g0325 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 553 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0325 Vra-Chr7 5062278 5068450 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0325 304 702 PHD Transcription Factor Family AT5G58610 45.499 8.84e-105 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra7g0325 Agenet 1.9e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0325 - - var:108323857 1627.45