Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0312 ATGGAGAAATCAAGGCCTTCAGACCAAGTTGTTCTCTTCATCGACCAACATAATCCTAAGCCATCATCCATGGAAGCCGAAAATCATCAAGAGAAACCCAGACACCCCATAAAAGTCAAAACCCTTAACCGTCTCAACTTCTCAAAACCCAAATCCCGAATCCAAGAGTACAACTATGTTCCCCGGAACAAGCTTGCAGCCTCTAAAGAAGAAGATGACATTATACAACCCACCTACAAGCTCACTTCCAATGAAGAAGACGACGAAGAAGATGACTGGAAATGGGACAAGGAAGAGATGGAAGAGGATGGCTCAGAGCATGACACAAAATTGCACCAGAAGAAGAAGTTCAGAGTCAAGTGGAGGCTCCTGATGGAGTGGGCTTTGTTCCTCAATATACTCGCATCCTTGGTGTGTTCTTTGACCATATCTTCCATAACCAACATGCATGTGCTGGGATTGGAGATTTGGAGGTGGTGCGTCATGGTAATGGTTACATTCAGTGGTCGTCTGGTTTCAGGGTGGCTAGTTGGTGTGATAGTGTTCTTCCTTGAACGAAACTTCATGCTAAGGGATAAGGTGCTGTACTTCATCTACGGGCTTAGGAAGAGCATAAGAAACTGTTTGTGGTTAGGTCTGGTGTTACTCTCCTACTGGAGCTTGGTATTCGACGATGTCCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGTTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGTTGGTGAAGATCGTGCTGGTGAAGATGCTGGCTTCTTCGTTCCACGTGACGACGTACTTTGACAGAATGAAGGAGAGTGTTTTCCACCACTACATTTTGGATACTTTGTCGGGTCCGCCGATGGAAGACGCGGAGGAGATATTGCGGCAGCACCACCTGACGGGGTCGAAGTCGATGCCTGCGAGGATGAAGATGAAGGAGGCGAAGAACTTGTACAAGTCGAAGAAATTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTGAGCATGGAGAGCCCTTCGTCTGCATGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCTGGCTTGTCCACCATTTCCAGAACTGTCGATGATTTTGGCAATGCCGAGTCTGAGATCAATAGTGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAGCCTCATGCCAAGTATATTGAAGAAGATGATCTGATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTGGAAACAGGACAGATAAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAGTCACTGAATGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGTGCAATTGTCAGTGTGATAATAATAATTGTGATGCTTTTGGTGATGGAGGTGGCCACTCTCAAGATAATATTGTTCTGCATAACACAAACAGTTCTCATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGTTGGAAGCCATAATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGATGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAACGAGAAAATTTACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGAAATGGGTGATGCAGTTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCAATACAGATGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAATACAGTTTGATAGCCAAAGGAATAGAGAATGTGGACAAGCTAAAGTTTGCGCTATGTGTGCAACACACTATCAACCATCAGAACTATGGTGAGAGAAACGTTAGGATAACTGAGCTTCTTTTGGAACTGAAGAGAATCTTTGAGATCCATGGTGTGAAGTATCATCTTCTTCCTCAGGAGATTCAGATCACCCATATGAATATTGAACATGGCAAAGTTCTCTTTCAATCATGA 2103 0.4394 MEKSRPSDQVVLFIDQHNPKPSSMEAENHQEKPRHPIKVKTLNRLNFSKPKSRIQEYNYVPRNKLAASKEEDDIIQPTYKLTSNEEDDEEDDWKWDKEEMEEDGSEHDTKLHQKKKFRVKWRLLMEWALFLNILASLVCSLTISSITNMHVLGLEIWRWCVMVMVTFSGRLVSGWLVGVIVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPPMEDAEEILRQHHLTGSKSMPARMKMKEAKNLYKSKKFGSRKIDMEKLRELSMESPSSAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPHAKYIEEDDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMGDAVDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKYSLIAKGIENVDKLKFALCVQHTINHQNYGERNVRITELLLELKRIFEIHGVKYHLLPQEIQITHMNIEHGKVLFQS* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0312 700 MobiDBLite consensus disorder prediction 84 99 - -
Vra7g0312 700 MobiDBLite consensus disorder prediction 1 36 - -
Vra7g0312 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 698 IPR016688 -
Vra7g0312 700 Pfam Mechanosensitive ion channel 471 676 IPR006685 GO:0016020|GO:0055085
Vra7g0312 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 698 - -
Vra7g0312 700 Gene3D - 530 579 IPR023408 -
Vra7g0312 700 SUPERFAMILY Sm-like ribonucleoproteins 521 579 IPR010920 -
Vra7g0312 700 MobiDBLite consensus disorder prediction 22 36 - -
Vra7g0312 700 MobiDBLite consensus disorder prediction 82 107 - -
Vra7g0312 700 PIRSF Memb_At2g17000 9 698 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0312 Vra-Chr7 4896447 4901789 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0312 6 690 Mechanosensitive Ion Channel Family AT5G12080 44.085 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0312 K22048 - gmx:100813521 1213.75