Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0310 ATGTTTACGTGTATAGCGTGTACGAAGCAAACGACGGATGAGAGGGAGGAAGAAGGAGTCCGTGAGAGTAGCACGCCGAGTACAAAAGAAGCTGTCAAAAGCCTGACCACACAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAACAATGCAAACCCTGCACAGGGTCTAGTAGCTACAAGAAAGGACATAGACCATATCCAGACTTCGATACCATCTCAGAAGGGGTTCCATACCCTTACATTGGGGGTGCAAGCTCAAGTTCAACCCCCGCTTGGGACTTCACAACATCTCACTACCCTGGAGGAAGATCAGACCCACGATTTGCTGGGGCATTTGGTGGTGACCGCACGCCTAGAGGACGAGACTCAGCATCAGTTTGTGATGTAGTCTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCAGTAGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTTAAAAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCGCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTGCAGAGATTTAATCGACAGGCGCTCAACACTCCTCCAAGGTCTGAGGACGAGCCAAGAGATTCTACCTTCTCAAGATTGACATCTGCACAGGAAAGTCCCATGCCGTCAAACAAGGATTGGACCCCCAGGAGTCACTATAAACCTTCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCATGGTGGAGGTGGTGGCCACTTGCATGCAGGGCCATCTATGGAACCAGCAAGGGATACTACTGCTTCTAGAGATGAGCCTTCTATCAGCAATGCCAGCGAAATGGAGGCAGAATGGGTAGAACAAGATGAGCCTGGGGTTTACATTACAATCCGGCAGTTAGCTGATGGGACCAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGTGAGGTGAATGCAAAAACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1053 0.4843 MFTCIACTKQTTDEREEEGVRESSTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFAGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAVVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTFSRLTSAQESPMPSNKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGHLHAGPSMEPARDTTASRDEPSISNASEMEAEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0310 350 Pfam Transcription factor BRX N-terminal domain 22 56 IPR027988 -
Vra7g0310 350 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 350 IPR044532 -
Vra7g0310 350 ProSiteProfiles BRX domain profile. 295 350 IPR013591 -
Vra7g0310 350 MobiDBLite consensus disorder prediction 10 32 - -
Vra7g0310 350 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 350 - -
Vra7g0310 350 MobiDBLite consensus disorder prediction 205 293 - -
Vra7g0310 350 MobiDBLite consensus disorder prediction 220 241 - -
Vra7g0310 350 Pfam Transcription factor regulating root and shoot growth via Pin3 141 195 IPR013591 -
Vra7g0310 350 Pfam Transcription factor regulating root and shoot growth via Pin3 294 349 IPR013591 -
Vra7g0310 350 ProSiteProfiles BRX domain profile. 141 196 IPR013591 -
Vra7g0310 350 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0310 Vra-Chr7 4850159 4857222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0310 1 350 Major Intrinsic Protein MIP AT1G31880 68.802 5.64e-171 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0310 - - ccaj:109789470 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0846 11 7090866 7092595 Vra7g0310 7 4850159 4857222 PCT