Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0294 ATGGGTTCCAATGGTAGCAAAGCCACTCCTTCTTCGTCGGGGAGTTTAAGGAAGGGTCGATCTACGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGTGATAATGCACACCAGGCTTGTGATAAGGATAAAGTAAATGGCAGTGATGTTACATATGCTAATGGTAATTTAACAAAGTCGTATGAGGTGAAAACAGAGTCATTTACAAAGGTTAAAGCTAGTGAAATAGCTTGTATGCCTTCTAACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCCAACACCTCATCCAGAACTGCTAGCAGCTCTAGCCATAATTCTTCAACCCATTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCAGGTAGTGTAAGCTTCAGACTTAGCCGAACCACCAGTTTGGGGTCATCAAGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCAATAATTGACAATGAAGATGAGTGTAATCTCCACCCTAGATCTCCTGGAAGTTCGATTAACAGAAGAGAAGCACTACAAGGCAATGACCTGCTTCATGCATCTGTTTTCAATCAAATTCATGTACAATCTTATGAAGATGCTTCCAGTAATTTAAGGTCAAGTGTCCTTACATCAGGTACACTTGGAAACTTGCAGAGAAATCCCACAGATGGAGTTCCCACAAGAGAAGGGCTGGATGTGAACTTATTTTCTCCGAGAATTCAAACAGAGACAGAAATTGATGACACTAGAAATATTGATCAACGAAATGGTGCTCGAGAATCAGTTGAACAGAATGTTCATTTTAGCCGAACTTTAAGTGTTGGAAGACTTCATGACAGAGTTCTTCGTAGAACAACATTTTCAGACCTCACCTTTTTCCCTTTGCAACAGGAAAGAGAGCCGAGAGATGATAGCCACCATAGCCAGGATATTGACAGGCAACCGGCGGAGGGAGATTCAAGAGTGTCGTCATCTGATCACATGACAGTTAATTCTTCTACATCTAGCATGTCTAACTCCATGTTTGGTATCCAAGACTATGAGGATGAGACTTCACGATTGAGAGAAGGTAGGCATCAGGATCTTCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCCTGTCTGGTCAACATAGAAATGGGCATTGTACATGCCGAATCAATAATCGAAACACTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTAGACGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGGCCATCTGTATCTTCTAGTGGATCTGTTCCTGCACCTAATGATGTTGTTGATTCATTGCCTGTCAAGTTATATGAGAAGCTGCACAAGCATCAAGAGGATGGTGCTCAATGCTATATATGCCTCGTGGAGTATGAGGATGGAGACAACATGAGAGTACTGCCATGCCATCACGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGCAGATTCACAGGGTATGTCCACTTTGTAGAGGGGACATATGCATATCGGATTCAACGCCATCAGAGAACAAGAGTGTGTAG 1692 0.4255 MGSNGSKATPSSSGSLRKGRSTGLRVFQSYCLGTTSGSHDSDNAHQACDKDKVNGSDVTYANGNLTKSYEVKTESFTKVKASEIACMPSNIDLHEWGETSIPNTSSRTASSSSHNSSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSSRPCPVSSASLSIIDNEDECNLHPRSPGSSINRREALQGNDLLHASVFNQIHVQSYEDASSNLRSSVLTSGTLGNLQRNPTDGVPTREGLDVNLFSPRIQTETEIDDTRNIDQRNGARESVEQNVHFSRTLSVGRLHDRVLRRTTFSDLTFFPLQQEREPRDDSHHSQDIDRQPAEGDSRVSSSDHMTVNSSTSSMSNSMFGIQDYEDETSRLREGRHQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRINNRNTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSSGSVPAPNDVVDSLPVKLYEKLHKHQEDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKQIHRVCPLCRGDICISDSTPSENKSV* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0294 563 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 96 122 - -
Vra7g0294 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 467 551 IPR013083 -
Vra7g0294 563 SUPERFAMILY RING/U-box 483 555 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 35 56 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 330 351 - -
Vra7g0294 563 Pfam Ring finger domain 504 547 IPR001841 -
Vra7g0294 563 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 562 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 1 19 - -
Vra7g0294 563 CDD RING-H2_PA-TM-RING 504 547 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 303 351 - -
Vra7g0294 563 ProSiteProfiles Zinc finger RING-type profile. 505 547 IPR001841 -
Vra7g0294 563 SMART ring_2 505 546 IPR001841 -
Vra7g0294 563 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 562 - -
Vra7g0294 563 MobiDBLite consensus disorder prediction 305 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0294 Vra-Chr7 4519655 4524351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0294 237 554 C3H Transcription Factor Family AT5G45290 61.231 7.34e-116 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0294 - - gmx:100812272 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0933 11 8101334 8106444 Vra7g0294 7 4519655 4524351 PCT