Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0281 ATGGATGGTGGTGACATGTTGAACGGCAAAGTGGGAAGCATACTAATCGCCGTTGGCTCAGCCAGTTTCGTGATCACAGTTTTCCATCTCATTATCCTTTGTCGCACTCATCATCGTGTTCGTGTCATCAACCACAATCCACAACAACAACCACGCAGAGTTAACATTTCGGTCTCACCACACCTCATTCCGATCCACACGTACCGAAAGAACAAAAGCCATGATGAGATGCCGGCGGAGGGCCAAGACGACGAAGATGACACGTGCGCCGTGTGCTTGGGAGAGTTCGAAGACGGTGAAGAGTTGAGGACGCTGCCGGAGTGTATGCACTCTTTCCACGTCGCCTGCATTGATCCGTGGCTCTCTTCCCGCTCCAGTTGCCCCGTCTGCCGCGCTCATGCAACGCCCTCGCCGGCGGTGGAGCACCCTGCGCCGGAGGTTGCTTCAGCTGCGTTCACTGCGCATCACATCATAGATATAGATATCACGCAAATCGTTCGCTTTCAAAATGGCTCAGCGCCACGCTGA 528 0.5417 MDGGDMLNGKVGSILIAVGSASFVITVFHLIILCRTHHRVRVINHNPQQQPRRVNISVSPHLIPIHTYRKNKSHDEMPAEGQDDEDDTCAVCLGEFEDGEELRTLPECMHSFHVACIDPWLSSRSSCPVCRAHATPSPAVEHPAPEVASAAFTAHHIIDIDITQIVRFQNGSAPR* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0281 175 Pfam Ring finger domain 87 131 IPR001841 -
Vra7g0281 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Vra7g0281 175 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Vra7g0281 175 CDD RING-H2_PA-TM-RING 88 131 - -
Vra7g0281 175 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 7 167 - -
Vra7g0281 175 SMART ring_2 89 130 IPR001841 -
Vra7g0281 175 SUPERFAMILY RING/U-box 81 137 - -
Vra7g0281 175 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 167 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0281 Vra-Chr7 4297604 4298131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0281 14 136 C3H Transcription Factor Family AT2G17450 38.211 4.41e-20 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0281 - - vra:106765957 367.466