Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0273 ATGGAACCGGGAACCCCATTAGAGAGTTCTTCCAATTTTGACTCTTTAATGTTCAATTCATCATCACACAGAAGTACCGTGTCCATTCAGTCCAGGAGTTTTGGTGTTAACAACTCCACCAGGGAAGTGAGTTTTGGCCACTCAGGATCCAAGCCAGCGAGATATGGGTCAACGGGTGCTGATTCCGAGTTTCTCAGTATGTCTCAGAAGGAAATACGTGATGAGGATGCAAGGTTGGTTTATGTTGATGATCCTGAGAAGACAAATGAAAAGCTTGAATTTGCTGGGAATTCGATTCTTACTGGAAAGTACTCCATCCTCACCTTTCTCCCAAGGAATTTGTTTGAACAGTTTCATAGAGTTGCTTATATTTACTTCCTTGCAATTGCCATTCTTAATCAGCTCCCTCAGTTAGCTGTTTTTGGGAGGGGTGTTTCCATTATGCCATTGGCCATTGTGCTTCTGGTTACTGCTGTGAAGGATGCATTTGAGGACTGGAGGAGGCACAAGTCTGACAAAATTGAGAACAACAGGTTCGGATTGGTTTTGGTTAATGATCAGTTTGTGGAGAAGAAGTGGAAGCATATTAGAGTTGGGGAAGTTATTAAAATCAGAGCGAATGAAACCATTCCTTGTGATGTTGTGCTGCTCTCGACTAGTGACCCCACTGGGGTTGCTTATGTGCAGACTCTTAATCTGGATGGAGAGTCTAATTTGAAGACTAGGTATGCAAAGCAAGAGACTCAATCTAAGGTGCCAGAAAAGGAGAAGTTAAATCTGTTGATTAAGTGTGAGAAACCCAATAGGAATATATATGGGTTTCAGGGTAATATAGAAGTTGATGGAAAGAGGTTGTCTCTTGGATCCTCTAACATTGTACTTAGAGGCTGTGAGCTCAAGAATACTAATTGGGCATTGGGAGTTGCCGTGTATTGCGGCCCTGAGACCAAAGCCATGCTCAACAGCTCAGGAGCTCCATCCAAAAGGAGTCTTCTTGAGACTCGCATGAACTCTGAGATCATTATGCTTTCTTTCTTTCTTATAGCTTTGTGTACAGTGACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTGAATCTCTCACCTTATTATAGGAAGCTGGATTTTTCAAAGGGGGAAGAGGACAACTATAAATATTATGGATGGGGACCAGAAATTGTTTTCACTTTCCTCATGTCAGTCATAGTGTACCAGGTTATGATCCCCATATCCTTGTACATTTCGATGGAGCTTGTCCGTGTTGGTCAGGCATACTTCATGATCGGAGATTCTAGAATGTATGATAAGGCAACAGAGTCAAGATTTCAGTGCAGAGCTTTGAATATTAACGAAGATTTAGGCCAAATTAAATATGTCTTTTCTGATAAAACTGGCACACTGACTGAGAACAAGATGGAGTTTAAATGCGCAAGCATATTGGGGTTTGATTACAGTTCAACGGCGGCCAGTCTTGAGAATGAGCAAGTTGAATACTCTGTTCAAGCGGATGGGACGGTCTTTAAGCCAAAGATGATGGTGAAAGTTAATCAAGAGCTTTTGCAATTATCAAAGAGTGGATTTACAAGTGAGGAGGGGAAACAGATTTATGATTTTTTTCTAGCATTGGCTGCCTGCAATACCATTGTGCCTCTTGTTGTTGACACATCTGACCCTATGGTTAAGCTGATAGATTACCAAGGAGAATCACCGGATGAGCAGGCATTGACTTATGCTGCCGCTGCGTATGGTTTTACGCTAATTGAACGAACCTCAGGTCACATAGTCCTTGATATTCGAGGAGAAAGGAAAAAGTTCAATGTCTTAGGTTTGCATGAATTTGATAGTGATCGAAAAAGGATGTCAGTTATACTGGGGTACAGTGACAATTGTGTGAAACTTTTTGTTAAAGGTGCAGATACATCCATGCTTAGATTGATTGACAAATCATTGAACACAGACATACTACAAGCAACTGAAACCCATCTTCGTTCTTATTCCTCTGTGGGTTTGAGGACACTTGTTATTGGGACTCGGGACTTAGAAGTTTCAGAATTTGAGCAATGGCACACTGCCTTTGAGGTAGCAAGTACTGCTTTGATGGGTAGGGCAGCTTTGCTTCGCAAGGTCGCTATCAATATAGAGAAGAATCTCTGCATATTGGGTGCAACTGCCATTGAAGATAAACTGCAGCAAGGTGTGCCAGAATCTATCGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTCTTGACTGGGGACAAACAGGAAACTGCCATATCTATTGGGTACTCCTCTAAGCTCCTAACGAGCAACATGATTCAAATTTTAATTAATTCCAACAATAGAGAGTCATGTAGAAGACGTTTACAAGATGCCCTTGTCATGTCTAGACAACACATGACTGTGCCTGGGGTTACTCACAATTCAGGAGGAAGTTCAGGATCTGTTTTAACTCTAGCCTTGGTTATTGATGGTACCAGTCTTGTTTATATTCTTGACAGTGAGCTTGAAGAAGATTTCTTTCAACTTGCAATTAGATGTTCTGTTGTTCTCTGTTGTCGAGTGGCTCCACTACAGAAAGCTGGGATTGTTGCCCTTGTGAAGAAGAGGACAGATGACATGACGCTAGCCATTGGAGATGGTGCTAATGATGTATCGATGATCCAAATGGCTGATATTGGAGTTGGAATCAGTGGGCAGGAAGGTCGGCAAGCTGTAATGGCTTCAGATTTTGCAATGGGGCAGTTTAGGTTTTTAGTTCCTCTCTTGTTGGTACATGGACATTGGAATTACCAACGACTGGGTTACATGATAATATACAACTTTTACAGAAATGCTATCTTTGTTCTTGTCCTATTTTGGTATGTGCTCTTTACTGCCTTCACATTGACAACAGCTATAAATGAATGGAGCAGCATGCTATACTCAATAATCTACACTGCAGTGCCAACTATTGTTGTTGGTATTCTCGACAAGGATCTTAGTAAAAGGACTCTCCTAAAGAATCCTCAGCTTTATGGGGCCGGGCTGAGAAATGAGGCCTACAACAAAAGGCTGTTTTGGTTGACAATGGCTGATACTTTGTGGCAAAGCATTGCTGTCTTCTTTGCTCCCCTTATTGCATATTGGGGAACCACTGTAGACGTAGCAAGCATAGGTGATCTTTGGACTCTTGCAGTAGTTATTTTGGTTAATTTGCATCTGGCCATGGATGTCATCAGGTGGAATTGGATTACTCATGCAGCCATTTGGGGCTCTATTGTAGCAACTTTCATATGTGTCATGGTTATTGATGCCATACCATCCTTTCCTGGTTACTGGGCTATCTTTGATGTTGGAGGCACTGCATTGTTCTGGTTATGTTTGGTTGGAAGTGTAATAGCCGCATTACTTCCCAGATTAGTTGTAAAATATGTTTACCAGTATTATTTTCCCAGTGATATTCAGATTTCAAGAGAAACTGAGAAGTTTGGGAATCCAAGAGACCATGGAGGAAGACAGATAGAAATGCTTCCTGTTTCAGATGGTCCAGTAAGATAG 3552 0.4172 MEPGTPLESSSNFDSLMFNSSSHRSTVSIQSRSFGVNNSTREVSFGHSGSKPARYGSTGADSEFLSMSQKEIRDEDARLVYVDDPEKTNEKLEFAGNSILTGKYSILTFLPRNLFEQFHRVAYIYFLAIAILNQLPQLAVFGRGVSIMPLAIVLLVTAVKDAFEDWRRHKSDKIENNRFGLVLVNDQFVEKKWKHIRVGEVIKIRANETIPCDVVLLSTSDPTGVAYVQTLNLDGESNLKTRYAKQETQSKVPEKEKLNLLIKCEKPNRNIYGFQGNIEVDGKRLSLGSSNIVLRGCELKNTNWALGVAVYCGPETKAMLNSSGAPSKRSLLETRMNSEIIMLSFFLIALCTVTSVCAAVWLKRHKDELNLSPYYRKLDFSKGEEDNYKYYGWGPEIVFTFLMSVIVYQVMIPISLYISMELVRVGQAYFMIGDSRMYDKATESRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFKCASILGFDYSSTAASLENEQVEYSVQADGTVFKPKMMVKVNQELLQLSKSGFTSEEGKQIYDFFLALAACNTIVPLVVDTSDPMVKLIDYQGESPDEQALTYAAAAYGFTLIERTSGHIVLDIRGERKKFNVLGLHEFDSDRKRMSVILGYSDNCVKLFVKGADTSMLRLIDKSLNTDILQATETHLRSYSSVGLRTLVIGTRDLEVSEFEQWHTAFEVASTALMGRAALLRKVAINIEKNLCILGATAIEDKLQQGVPESIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTSNMIQILINSNNRESCRRRLQDALVMSRQHMTVPGVTHNSGGSSGSVLTLALVIDGTSLVYILDSELEEDFFQLAIRCSVVLCCRVAPLQKAGIVALVKKRTDDMTLAIGDGANDVSMIQMADIGVGISGQEGRQAVMASDFAMGQFRFLVPLLLVHGHWNYQRLGYMIIYNFYRNAIFVLVLFWYVLFTAFTLTTAINEWSSMLYSIIYTAVPTIVVGILDKDLSKRTLLKNPQLYGAGLRNEAYNKRLFWLTMADTLWQSIAVFFAPLIAYWGTTVDVASIGDLWTLAVVILVNLHLAMDVIRWNWITHAAIWGSIVATFICVMVIDAIPSFPGYWAIFDVGGTALFWLCLVGSVIAALLPRLVVKYVYQYYFPSDIQISRETEKFGNPRDHGGRQIEMLPVSDGPVR* 1184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0273 1183 SFLD p-type atpase 448 933 IPR044492 -
Vra7g0273 1183 SUPERFAMILY Calcium ATPase, transmembrane domain M 94 1149 IPR023298 -
Vra7g0273 1183 Gene3D - 563 702 IPR023299 GO:0000166
Vra7g0273 1183 Pfam Cation transport ATPase (P-type) 572 647 - -
Vra7g0273 1183 MobiDBLite consensus disorder prediction 1160 1183 - -
Vra7g0273 1183 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1150 IPR032630 -
Vra7g0273 1183 ProSitePatterns E1-E2 ATPases phosphorylation site. 466 472 IPR018303 -
Vra7g0273 1183 CDD P-type_ATPase_APLT_Dnf-like 96 1042 - -
Vra7g0273 1183 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 470 736 IPR023299 GO:0000166
Vra7g0273 1183 Gene3D - 720 922 IPR023214 -
Vra7g0273 1183 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 396 485 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g0273 1183 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 851 968 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g0273 1183 SUPERFAMILY Calcium ATPase, transduction domain A 178 318 IPR008250 -
Vra7g0273 1183 SFLD C1.7: P-type atpase like 448 933 - -
Vra7g0273 1183 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 1182 - -
Vra7g0273 1183 Pfam Phospholipid-translocating ATPase N-terminal 80 145 IPR032631 -
Vra7g0273 1183 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 1182 - -
Vra7g0273 1183 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 94 1157 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra7g0273 1183 Gene3D - 156 321 - -
Vra7g0273 1183 SUPERFAMILY HAD-like 451 923 IPR036412 -
Vra7g0273 1183 PRINTS P-type cation-transporting ATPase superfamily signature 464 478 - -
Vra7g0273 1183 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0273 Vra-Chr7 4233196 4239366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0273 23 1183 Primary Pumps ATPases AT5G04930 69.019 0.0 1697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0273 K14802 - gmx:100784988 2070.05