Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0272 ATGGATGGGGTCGCACGTGCGGACAAGGCTCCGTCCACGGACTTGGCCTCGGAGTGGCGTCCCCGCGGTTCTGCGTTCGTCCCTTGTGTGCCAAAGGCTGGAGAAGAAGCTTCTGCTGCTGCTGCTGAGAAGCCGCAACCGTCTCGCGTGGTTTTGAGGAAGCCCTTGGTGGCTAGATTGACCAAGGAAATAGTTCAAACATACCAAATATGCAATCCACAGTTTAAATATTCTGAAGATCTAAATCCAAAAAGATTTTTGACCAGCCCGTCAGTGGGAGTGCTTAATGATGGCTATGATAATGTAAACTCAGATCTTATTTTGACAGTGAATTTTGTCTTGAACCATTTAGACAAAAATAAAAGATATATTGTCAAAGATCTCCTTGGCCATGGGACATTTGGACAAGTGGCTAAATGCTGGGATTCAGATACCAACAGTTTTGTTGCCGTGAAGATCATTAAAAACCAACCTGCATACTATCAACAAGCACTGGTTGAAGTAACTATCTTATCAACGTTAAATAAGAAGTATGATCCTGAGGATAAGCATCACATTGTTCGTATATATGATTATTTTGTACATCAACGACATTTGTGCATTTGCTTTGAGTTGTTGGACACAAACTTGTACGAGCTTATCAAGATGAATCATTTTAGGGGACTATCCCTTGGTATTGTTCAGCTATTCTCTAAGCAGATTTTATGCGGACTTGCTCTGCTAAAAGAGGCTGGAGTTATTCATTGTGATCTGAAGCCAGAAAACATTCTTTTATGTACGAGCACTGTGAAGCCAGCAGAAATAAAAATTATTGACTTTGGATCAGCATGCATGGAAAACCGCACTGTTTACTCTTACATTCAGAGTCGATACTATAGATCTCCTGAGGTTCTTCTTGGATATCAATACACAACAGCTATTGATATGTGGTCCTTTGGATGCATAGTGGCGGAATTGTTTCTTGGATTACCATTATTCCCTGGAGCTTCAGAATTTGATCTTTTGAAACGGATGATTGAAATACTTGGAGGACAACCACCCGATTATCTACTTAGGGATGCCAAAAACTCAAGTAAATTCTTCAAGTGTGTTGGGAGTCTCCAGAACATAGAGAGCAGTGAGAATTCCAAAAATGGAAGAAGTCTCTATCAAGCATTGACAGTGGAAGAATATGAAGCTAGAGAATTGAAGAAGCCTGCAATTGGAAAAGAGTATTTTAATCATATGAATCTAGAGGCAATTGTTACAAACTATCCCTACCGAAAAAATCTAGCTAAAGAAGATATTGTCAAAGAAAGTCAAATACGACTGGCTCTTATTGATTTTTTGAAAGGGCTTGTTGAATTGGATCCTTCAAAGCGCTGGTCACCTGTTCAGGCTTCAAAACACCCTTTTGTAACTGGGGAACCTTTTACACATCCTTACATGCCTCCCCCTGAGACTCCTCAAATGCCAGTAGTTCAGAATATCAAGGTGGATAATCATCCAGGAGGAGGACACTGGTTTGCTGCCGGTCTATCACCTAATGTTCAGGGCAAAAGCAGAGCTTCACTCTATAGCAGTCCACATTTTCAGATGGTTCAACATCAGCCTGCTAATAGTTATGGGAGTGTAGGAAGCCATGGGAGCTACAATGATAGTATTGGGCTTGGAAGCAGCTACGGAAGTTATGGAGAAAGCACTAACATGTTTGCTTACTATTCACCTATTGGTCCATCTGGTATGAACATGCACAATCAGGGAGGTATGTCAATGCTTGGGAATAGTCCTGATGCTAGGAGAAGAGTTAAATACCCGCCTGGGAATGGATTGGGCATAAGCCCATCAGCTGGAAATTTTGCTCCCCTGCCCCTTGGTGCGAGCCCATCTCAATTTACTCCACCTAGTTCCTACAGTCAGGTTTCAGTTGTTTCTCCAGGACACTTTGGACCAACATCTCCTGCAAGAGGAACTTCTCACGGATCACCTTTAGGCAAGACGGCTGCAGTTAGCCAGTTTAATAGAAGAAAAAATTGGGGACATTCTGGAAGTCCTCAAGCTCAAGAAACAACGTTTTCTTCACATTGGCAAAGTCCATATCCTGACAGCACAAGCCATACTGAGGGAACAACACAACCTCTCGGCAACTCACCATCATATCTACAGTCAAATTGTATTCCTGTAAACCGGAAACAGCGAGGAAGTGGAGGATTATCTGCTAACCCCAACATTTCGTGTTTGATTAAGCCTGGTGCTAATTTGAACTCACAAACAGAATTGGTTCATGACAATGCTGAGACAGGCATTTCATTGCCTGATCCTGGCGATTGGGACCCTAATTACAGTGATGAATTACTTCTTCAAGAGGATGGTTCAGATGAAAGCTGTTTGGCAAATGAGTTTGGCAGAAGTATTAATCTTGGATCTACTGAAACATGGGCTGGATTTGGAAGGTTCAACCATGTATCCAGCTCTAATGCTCCAATGACCATGCAAAGACTAAATGGACCAAATCAATCTTATACTAACGTCGAGATGGGTAGCCTTCCAACGCATGATCTTCAAGCAGCATATGTACCCTCTCTGTCTAAGCAGTTTCATCTTATGCCTCATATTTTACATAATTCTCCAAGCCGTTTCGGACACCAATCTGTTCAAAGATATACACATGGTAGACCCCCCCAGGGTGGTGATTGGAATCAAATTAAAATTCAGGCTCCTTCCGGTTTTGGCAGTGTGGGTCCTCGTTCTCCGAGGAGTAACTCATTCACCAACAGTATGACATGGGGGCGCAGAATGGATCCTCAGGTATCAAGCATGCCTCCGACTTCCCGCACAAGAAAAGATTATGCAAGGATAGACTAG 2844 0.4265 MDGVARADKAPSTDLASEWRPRGSAFVPCVPKAGEEASAAAAEKPQPSRVVLRKPLVARLTKEIVQTYQICNPQFKYSEDLNPKRFLTSPSVGVLNDGYDNVNSDLILTVNFVLNHLDKNKRYIVKDLLGHGTFGQVAKCWDSDTNSFVAVKIIKNQPAYYQQALVEVTILSTLNKKYDPEDKHHIVRIYDYFVHQRHLCICFELLDTNLYELIKMNHFRGLSLGIVQLFSKQILCGLALLKEAGVIHCDLKPENILLCTSTVKPAEIKIIDFGSACMENRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLKRMIEILGGQPPDYLLRDAKNSSKFFKCVGSLQNIESSENSKNGRSLYQALTVEEYEARELKKPAIGKEYFNHMNLEAIVTNYPYRKNLAKEDIVKESQIRLALIDFLKGLVELDPSKRWSPVQASKHPFVTGEPFTHPYMPPPETPQMPVVQNIKVDNHPGGGHWFAAGLSPNVQGKSRASLYSSPHFQMVQHQPANSYGSVGSHGSYNDSIGLGSSYGSYGESTNMFAYYSPIGPSGMNMHNQGGMSMLGNSPDARRRVKYPPGNGLGISPSAGNFAPLPLGASPSQFTPPSSYSQVSVVSPGHFGPTSPARGTSHGSPLGKTAAVSQFNRRKNWGHSGSPQAQETTFSSHWQSPYPDSTSHTEGTTQPLGNSPSYLQSNCIPVNRKQRGSGGLSANPNISCLIKPGANLNSQTELVHDNAETGISLPDPGDWDPNYSDELLLQEDGSDESCLANEFGRSINLGSTETWAGFGRFNHVSSSNAPMTMQRLNGPNQSYTNVEMGSLPTHDLQAAYVPSLSKQFHLMPHILHNSPSRFGHQSVQRYTHGRPPQGGDWNQIKIQAPSGFGSVGPRSPRSNSFTNSMTWGRRMDPQVSSMPPTSRTRKDYARID* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0272 947 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Vra7g0272 947 MobiDBLite consensus disorder prediction 907 938 - -
Vra7g0272 947 PANTHER BNAC04G29850D PROTEIN 44 728 - -
Vra7g0272 947 SUPERFAMILY Protein kinase-like (PK-like) 118 489 IPR011009 -
Vra7g0272 947 SMART serkin_6 123 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0272 947 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vra7g0272 947 ProSiteProfiles Protein kinase domain profile. 123 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0272 947 MobiDBLite consensus disorder prediction 618 730 - -
Vra7g0272 947 CDD PKc_YAK1 123 466 - -
Vra7g0272 947 Gene3D Transferase(Phosphotransferase) domain 1 204 467 - -
Vra7g0272 947 MobiDBLite consensus disorder prediction 884 947 - -
Vra7g0272 947 MobiDBLite consensus disorder prediction 623 640 - -
Vra7g0272 947 MobiDBLite consensus disorder prediction 584 604 - -
Vra7g0272 947 PANTHER DUAL SPECIFICITY PROTEIN KINASE 44 728 - -
Vra7g0272 947 MobiDBLite consensus disorder prediction 648 730 - -
Vra7g0272 947 Pfam Protein kinase domain 124 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0272 947 Gene3D Phosphorylase Kinase; domain 1 88 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0272 Vra-Chr7 4181802 4214924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0272 122 347 Core Cell Cycle Gene Families AT1G66750 35.043 1.90e-31 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-YAK Vra7g0272 Pkinase 2.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0272 K18670 - gmx:100792777 1699.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0272 7 4181802 4214924 Vra7g0272 7 4181802 4214924 ECH