Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra7g0268 | ATGAGTTCATTCTCCATCACACGGAAAAAAACGCCATTCCAGAAGCATAGAGAAGAAGAGGAGGCAAAGAAGAAGAGAGCGGAGGATGAGACTGCTCGCTTGTATGCTGAGTTTGTAGAGTCATTTCAAGGAGACACTACTCCGGGGTCAAAAACTTTTGTTCGAGGAGGAACAATTAATCCCAATGATAGATTTAAAGATGATACTGAGGGTGAAAAGTCCAAAGATGGGGTATCTGTTCCAAAGAAGGGAAGTAGGTATGTACCATCTTTTATTCCACCTCCAATGGCAACCAAGGGGAAAGAATCTGAAAGGAAAAAAGAGGAGGAAAAGCCAAAGGAGAAAGAGAAAGGGAAGTCAAGAAATATTGATCATTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAGCATTGGCGTGACGGTCGTCATGCAGAACATTCTGCTCAGCCCAGTCGCTTTGATGAGCTGCCTGATGACTTTGATCCTAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCTCAGACTACAAATCTTTATGTTGGAAATCTCTCACCCAAGGTTGATGAAAATTTTCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAGATTATGTGGCCAAGGACAGAGGAGGAGCGAAGGCGGCAAAGGAACTGTGGCTTTGTAGCTTTCATGAACAGAGCTGATGGACAGGCAGCAAAGGATGAGATGCAAGGAGTTGTGGTTTATGAATATGAATTGAAAATTGGATGGGGAAGGTCTGTTGCTCTACCATCGCAAGCACTACCTGCACCTCCACCAGGGCATATGGCCATTAGGAGTAAGGAGGGTAGTACTGTCATATTGTCTGGTCCTTCAGGTCCACCATTAACATCCGTGCCTAATCAGAATTCTGAGCTGGTTCTGACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGAACATTTAAGGCATGTAATTGATACAATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAGCAAGCTATCATGGAGAGGGGTCGTGGCAATCCTCTTTTCAACTTCTTGTTTGTCCTAGGCTCAAAGGAACATACCTACTACGTTTGGAGACTGTACTCATTTGCCCAGGGTGATACCCTTCAAAGATGGAGGACTGAACCTTTTATCATGATAACGGGTAGCGGAAGATGGATTCCTCCCTCATTACCAACGTCAAAAAGTCCAGAACATGAAAAGGAGTCTGGTTCCACACATGCTGGAGGAAGAAGCAGGCGTGTTGAGCCAGAAAGAACACTGACTGATGCACAGAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACTCTAGAGAGGAGCCAGATAAAAGAGGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGGGAGATAGTTGAAGTCTTGACTGAATCCTTGACACTTAAAGAAACCCCCATTCCTACTAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCTCCTGTAAGAAATGCGTCAGCATATCGCACCAAGTTTGAAGCAACATTACCAGACATAATGGAGAGTTTTAATGACTTGTACCGTAGCATAATGGGGCGTATTACTGCTGAAGCCCTAAAGGAACGTGTGCTTAAAGTTTTGCAAGTATGGGCGGACTGGTTTCTATTTTCAGATTCTTATGTGAATGGCTTAAGAGCTACTTTTCTTCGACCTGGGAATTCTGGTGTAATTCCATTCCATTCCATATGTGGGGATGCACCTGAGATTGAACAGAAGACCACTTCTGAAGATATAGTTGTTGGTGGCAAGACCAACCAAGATGCTGCATTGGCAATGGGTCGAGGGGCTGCAATGAAGGAGCTAATGAGTCTCCCTATTGCTGAGCTGGAAAGACGATGCCGACACAATGGATTGTCACTTGTTGGTGGTAGAGAAATGATGGTTGCACGGTTGTTAAGTCTTGAAGAGGCAGAAAAGCAAAGAGGTTATGAACTAGATGATGAACTGAAATATGCCCACAACCAAGTGAGTTCTGGGAAGTATTCAAGTAATAGGCAAGAAACAAGTGCAGAGCCTGAACCAGTAGGACTTTCTTCATGGAACCACTATGGGGATGAAGATTTGCCGTCACAGAGCAGAAGTTCTGTATCTTTAGCTTCTACACTTCCTATTCAACAACCTGAGCTTAAGGCATTCACAAAAAAGGAAAAGAGTGATCCAGTTCTGCCAGCCTCAAAATGGGCCCGGGAGGATGATGAGAGTGACGATGAACAAAGGAGAGGTGGAAAAAATCTCGGCTTAAGTTACTCATCTTCTGGTAGTGATAATGTGGATGATGGTCTTATTAAAGCTGATGAATCAGAGTCTGCAGCTGGTACAAGTTTTCCAGCTCATGCCGAGAGTGGAATGAATGAAGAGCAGAGGCAAAAGCTAAGACGCTTGGAGGTTGCTTTAATTGAATACCGTGAATCTCTTGAAGAAAGGGGAATTAAAAATTTGGAGGAAATTGACAAGAAAGTGGAGTCACATAGAAAACGGCTGCAAGCAGAATATGGATTATCAGATTCTGGTGAAGATGGTAAAAGTAATACAGGAAAAACTACAGAGAAGAGGGATAGGCATGATGTCTCAAGGAAACGACACCGAAGCCGAAGTCCAAGTGATAGTCCACAACCAAAATTATCTGGAAAAGACAAGGACAGAGAACATGATTTAGAAAGGGATCGAGACAGACAAAGGGACAGAAGTTATGATATTGATATTGAAAGAGGAAAGGACCGACACCGGGAAAAGAGTGGAAGCAGAGAGAGGGATGATCATGATAAGGACAGAAGCAGGGATAGGGACAGAGACAGAAGAAGACGGACCAAATAA | 2925 | 0.4359 | MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKTFVRGGTINPNDRFKDDTEGEKSKDGVSVPKKGSRYVPSFIPPPMATKGKESERKKEEEKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQEREHWRDGRHAEHSAQPSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGRSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPLTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPTSKSPEHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDMLRALTLERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDSYVNGLRATFLRPGNSGVIPFHSICGDAPEIEQKTTSEDIVVGGKTNQDAALAMGRGAAMKELMSLPIAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAHNQVSSGKYSSNRQETSAEPEPVGLSSWNHYGDEDLPSQSRSSVSLASTLPIQQPELKAFTKKEKSDPVLPASKWAREDDESDDEQRRGGKNLGLSYSSSGSDNVDDGLIKADESESAAGTSFPAHAESGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIDKKVESHRKRLQAEYGLSDSGEDGKSNTGKTTEKRDRHDVSRKRHRSRSPSDSPQPKLSGKDKDREHDLERDRDRQRDRSYDIDIERGKDRHREKSGSRERDDHDKDRSRDRDRDRRRRTK* | 975 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
Vra7g0268 | 974 | ProSiteProfiles | CID domain profile. | 444 | 589 | IPR006569 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 41 | 186 | - | - | |
Vra7g0268 | 974 | Coils | Coil | 449 | 469 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 99 | 170 | - | - | |
Vra7g0268 | 974 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 268 | IPR000504 | GO:0003723 | |
Vra7g0268 | 974 | Gene3D | - | 820 | 871 | - | - | |
Vra7g0268 | 974 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 261 | IPR000504 | GO:0003723 | |
Vra7g0268 | 974 | SMART | 558neu5 | 451 | 586 | IPR006569 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 411 | 444 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 721 | 744 | - | - | |
Vra7g0268 | 974 | Coils | Coil | 821 | 841 | - | - | |
Vra7g0268 | 974 | Coils | Coil | 17 | 37 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 418 | 444 | - | - | |
Vra7g0268 | 974 | Gene3D | Surp module | 322 | 391 | IPR035967 | GO:0003723|GO:0006396 | |
Vra7g0268 | 974 | PANTHER | - | 5 | 970 | - | - | |
Vra7g0268 | 974 | SUPERFAMILY | RNA-binding domain, RBD | 180 | 275 | IPR035979 | GO:0003676 | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 898 | 967 | - | - | |
Vra7g0268 | 974 | SUPERFAMILY | Surp module (SWAP domain) | 310 | 391 | IPR035967 | GO:0003723|GO:0006396 | |
Vra7g0268 | 974 | ProSiteProfiles | SURP motif repeat profile. | 336 | 379 | IPR000061 | GO:0003723|GO:0006396 | |
Vra7g0268 | 974 | SMART | surpneu2 | 334 | 388 | IPR000061 | GO:0003723|GO:0006396 | |
Vra7g0268 | 974 | SMART | cwf21_2 | 820 | 869 | IPR013170 | - | |
Vra7g0268 | 974 | Gene3D | - | 96 | 270 | IPR012677 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 844 | 974 | - | - | |
Vra7g0268 | 974 | CDD | RRM_SR140 | 186 | 269 | IPR035009 | - | |
Vra7g0268 | 974 | Coils | Coil | 847 | 867 | - | - | |
Vra7g0268 | 974 | Pfam | CID domain | 451 | 579 | IPR006569 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 692 | 712 | - | - | |
Vra7g0268 | 974 | PANTHER | RNA PROCESSING PROTEIN LD23810P | 5 | 970 | - | - | |
Vra7g0268 | 974 | SUPERFAMILY | ENTH/VHS domain | 448 | 585 | IPR008942 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 43 | 57 | - | - | |
Vra7g0268 | 974 | Pfam | cwf21 domain | 821 | 867 | IPR013170 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 844 | 869 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 747 | 779 | - | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 692 | 825 | - | - | |
Vra7g0268 | 974 | ProSiteProfiles | SAP motif profile. | 638 | 672 | IPR003034 | - | |
Vra7g0268 | 974 | Gene3D | - | 444 | 590 | IPR008942 | - | |
Vra7g0268 | 974 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Vra7g0268 | 974 | Pfam | Surp module | 334 | 386 | IPR000061 | GO:0003723|GO:0006396 | |
Vra7g0268 | 974 | SMART | rrm1_1 | 188 | 264 | IPR000504 | GO:0003723 |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra7g0268 | 187 | 256 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 38.571 | 3.42e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra7g0268 | K12842 | - | gmx:100776093 | 1691.01 |