Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0254 ATGACAACCCTTAGTGTGCTGCTTTTTCTGGGATTCTTGTGGGCTGAAATTCATGTCATTTCTTCATACACTGACTCTCAAGACGTTGTTGCACTTAGATCATTAAAAGATGTATGGCAAAATACACCGCCTAGCTGGGACAAATCAGATGACCCATGTGGAGCACCATGGGAAGGAGTGACCTGCAACAAATCAAGGGTTACTTCATTAGGACTGTCAACAATGGGCCTGAAGGGGAAATTAAGTGGAGATATTGGTCAACTTACAGAACTGAGATCCTTGGATTTGTCTTTTAATAGAGATTTAACAGGTCCTCTCTCTCCAGAGTTAGGAGAACTAAGCAAGCTAAATATCCTGATTTTGGCTGGTTGCGGCTTCAGTGGCAATATTCCAGATGAATTAGGAAATCTTTCAGAGTTATCTTTCCTGGCTTTAAACTCAAACAACTTCACTGGAAAAATACCTCCTTCGTTGGGTAAACTCTCCAAAATTTATTGGTTGGACTTGGCAGACAATCAGTTGACAGGTCCTATCCCAGTTTCAACCTCCACCTCCCCTGGATTAGACCTTCTTTTAAAGGCTAAACACTTCCATTTCAATAAGAACCAGCTTTCAGGATCCATTCCCCCCAAGCTTTTCAGCTCTGAGATGATACTCATACACATATTGTTTGATGGGAATAATTTAAGTGGGACTATACCTTCAACATTGGTACAAGTTAAGACTGTTGAAGTTCTACGGCTTGATAGGAATTTCCTGACAGGAGAGGTCCCATCAAATCTCAACAACCTTACAAACATCAATGAATTGAATTTAGCTCATAACAATTTCACAGGTCCTCTACCTGACTTAACAGGAATGGATACCCTCAACTATGTAGATCTTAGTAACAACTCTTTTGATGCATCTGATGCTCCAACTTGGTTCATAACTCTGCCATCACTCACCACTCTGGTTATGGAGTTTGGGTCCCTTCAAGGTCCTCTTCCGTCGAAACTATTTGACATTCCTCAAATACAGCAAGTGAAACTACGAAACAATCAATTGAACGATACATTGAATATGGGTGAAAACATTTGTCCTCAACTGCAGCTTGTAGATTTGCAACAAAATGAGATTTCCTCGGTGACTCTCAGTTCACAATACAAAAATACATTGATTCTGATAGGAAATCCAGTGTGCAGTAGTGCTCTCTCAAATACAAATTACTGCCAACTTCAGCAGCAGGCTAAGCAACCTTATTTCACCAGCTTGGCTAATTGTGGAGGAAAATCTTGTCCTCCTGATCAAAAGCTCAGCCCCCAAAGTTGTGAATGTGCCTATCCATATGAAGGAATGCTGTACTTTAGAGCACCCACATTCAGAGAACTGTCCAATGTAAATACTTTCCATTCACTTGAAATGAGCCTATGGGTGAAATTGGGTCTAACTCCTGGCTCAGTTTCTTTACAAAATCCCTTCTTTGATAGTAATGACTATCTTCAAGTGCAACTAGCACTCTTTCCACCAACAGGCCAATACTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTGAATTAAGTAATCAAACTTACAAGCCTCCAAAAGAGTTTGGACCCTATTACTTCCTAGCATTTTCTTATCCGTTTTCAGGTTCTCACAAAGGAGCTTCTCTTAGCAAAGGTGTTATTATTGGGATAGCAGTTGGCAGCACATTTCTGGTTCTGAGCCTTATAGGGTTAGCTATTTACGCGATTCTGCAAAAGAAGCGTGCAGAGAGAGCCATAGGATTAAGTAGACCATTTGCATCATGGGCACCAACTGGGAAGGATAGTGGAGGTGCACCACAGTTAAAGGGAGCAAGATGGTTCTCTTATGATGATCTCAAGAAGTGCACCAGCAATTTCTCTGAAAACAATGAGATAGGCTCTGGAGGCTATGGCAAGGTGTACAAAGGTGTTCTTCCTGATGGGAAAATCGTTGCAATCAAACGAGCTCAGCAAGGATCTATGCAAGGAGGCCTAGAGTTCAAGACTGAAATTGAGTTGCTTTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTGGGGTTCTGCTTCGAACAAGGGGAACAGATGTTGGTTTACGAATTTATACCCAATGGAACACTTAGGGAGAGTTTGTCAGGGAGATCTGATATTCATCTTGACTGGAAAAGGAGACTCCGCATTGCTCTTGGTTCAGCCAGAGGACTTGCATACTTACACGAACTTGCCAATCCTCCCATAATCCACAGAGATGTGAAGTCGAGTAATATCTTGCTGGATGAAAATTTGACTGCAAAGGTTGCAGATTTTGGCTTGTCCAAACTTGTATCAGACAGCGAGAAAGGCCATGTTTCCACTCAGGTTAAAGGGACATTGGGTTATCTGGATCCTGAGTATTACATGACCCAACAACTCACTGAGAAGAGTGATGTGTACAGTTTTGGAGTAGTAATGCTTGAACTAATAACTTCAAGACAACCAATTGAGAAGGGGAAGTACATTGTCCGCGAGGTGAGGACGCTGATGAATAAGAAGGATGAAGAACACTATGGTTTGAGGGAACTGATGGATCCAGTGGTGAGGAACACACAGAACCTCATAGGATTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGAATCAGCTGCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCACTTGAAACCATTTTGCAGAATGATGGGATGAACACAAACTCTACTTCTGCATCCTCATCTGCCACTGATTTTGGTGTTTCCAAGGGTGGAATGAGGCATCCCTACATTGATGCTTCTTTTACCAAGAAAGACAATGGTAATGACAGTAGTAATAGTGCCTTTGACTACAGCGGAGGCTACACACTTTCAACAAAAGTTGAACCCAAATAG 2904 0.4184 MTTLSVLLFLGFLWAEIHVISSYTDSQDVVALRSLKDVWQNTPPSWDKSDDPCGAPWEGVTCNKSRVTSLGLSTMGLKGKLSGDIGQLTELRSLDLSFNRDLTGPLSPELGELSKLNILILAGCGFSGNIPDELGNLSELSFLALNSNNFTGKIPPSLGKLSKIYWLDLADNQLTGPIPVSTSTSPGLDLLLKAKHFHFNKNQLSGSIPPKLFSSEMILIHILFDGNNLSGTIPSTLVQVKTVEVLRLDRNFLTGEVPSNLNNLTNINELNLAHNNFTGPLPDLTGMDTLNYVDLSNNSFDASDAPTWFITLPSLTTLVMEFGSLQGPLPSKLFDIPQIQQVKLRNNQLNDTLNMGENICPQLQLVDLQQNEISSVTLSSQYKNTLILIGNPVCSSALSNTNYCQLQQQAKQPYFTSLANCGGKSCPPDQKLSPQSCECAYPYEGMLYFRAPTFRELSNVNTFHSLEMSLWVKLGLTPGSVSLQNPFFDSNDYLQVQLALFPPTGQYFNRSEVQRIGFELSNQTYKPPKEFGPYYFLAFSYPFSGSHKGASLSKGVIIGIAVGSTFLVLSLIGLAIYAILQKKRAERAIGLSRPFASWAPTGKDSGGAPQLKGARWFSYDDLKKCTSNFSENNEIGSGGYGKVYKGVLPDGKIVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFIPNGTLRESLSGRSDIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDENLTAKVADFGLSKLVSDSEKGHVSTQVKGTLGYLDPEYYMTQQLTEKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTQNLIGFGRFLELAMQCVEESAADRPTMSEVVKALETILQNDGMNTNSTSASSSATDFGVSKGGMRHPYIDASFTKKDNGNDSSNSAFDYSGGYTLSTKVEPK* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0254 967 Gene3D Ribonuclease Inhibitor 25 184 IPR032675 -
Vra7g0254 967 MobiDBLite consensus disorder prediction 936 967 - -
Vra7g0254 967 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 935 - -
Vra7g0254 967 SMART serkin_6 629 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0254 967 SUPERFAMILY L domain-like 35 397 - -
Vra7g0254 967 SUPERFAMILY Protein kinase-like (PK-like) 615 911 IPR011009 -
Vra7g0254 967 Pfam Protein tyrosine and serine/threonine kinase 632 899 IPR001245 GO:0004672|GO:0006468
Vra7g0254 967 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Vra7g0254 967 Gene3D Transferase(Phosphotransferase) domain 1 705 924 - -
Vra7g0254 967 MobiDBLite consensus disorder prediction 940 957 - -
Vra7g0254 967 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0254 967 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Vra7g0254 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Vra7g0254 967 CDD STKc_IRAK 635 902 - -
Vra7g0254 967 PANTHER LRR RECEPTOR-LIKE KINASE 1 935 - -
Vra7g0254 967 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Vra7g0254 967 Gene3D Ribonuclease Inhibitor 285 386 IPR032675 -
Vra7g0254 967 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0254 Vra-Chr7 3886249 3892279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0254 1 967 Receptor kinase-like Gene Family AT1G79620 70.512 0.0 1425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra7g0254 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0254 - - gmx:100792249 1797.33