Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0253 ATGGAAGAAGACCAAGAGTCTCGGCATCAAAGGGAAAATCGAGGGTCTGTTCCTCGGGAAGGAGAAGCGTTAGAGGGTAATGGAGGAGGTGTTAACTGCAATGAGATTCGTTCTTTCACGTGCGATATCTGCAACAAAGGTTTCAGTTCGGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTCTCGAGAAAACGGGTTCATGGGGAGAAACAAAGCACTGGTGATGCTGCAAAATCGAAGACGGCGAAATGGGTGATGGTGGATGGTAATCCCACTTGTTCCGTTTGCGGAAAGAGCTTTTCTTCCAGGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGGCGAAGAAGGGAATTCAAAGCAACGCTCCGATCGTTGGTGCCTCCTCCAATTCCACTTCTTCCTCAACCCTTTCTGATGATTTGGCCGTTGATCTCTCTCGAGTTCTCAGGGGTTGGTCCGTTACTGCCAAGAGGGGCCGCATAAGCTCTTCTTGCAGCAAATCAGATTCTGGTTTGGAAGAAGGTGATGAGATTGAGCCACGTATGCAAGAGGCTGCGTATGAGCTCATGTTGCTGGCCAGAGGGAGTCCGAAGTGCGAGCAAGAGGTTGTCGCTGATCAGATTCAAGAACATCCATTCAACAAGAGGGGGCGTGAAGAGGAGCTTTCACACCCAATTTTGGGGAATTCTGATGACGTGAAGATCAAGAAGAGAAATAGAAAGAAGGTGAAATTAACAGAATTAGCATCAAGCGGGGAAGGGAACAAATTGGCCAAATGCAGAAAATGCAATACAACTTTCCCAAGTCACCAATCTTTGAATGATCATCTATGCATCGTTCAAAATTCTAAGAATATTCAGTCTCGGTCACATGGTGTGTCAGCCACAAAAGAAGAGCATGATGCCAAAACAACCATACAAGGGGAGAAAACAGGAGCAGGAACTGTTTTAGAGGGTAGAGCTGTGGAAGCCATGAGAGGGTATGAGTGTGAAGTTTTGAACGAGAGTTTCTCAATTGGTCAAGGCTTTGGGGACCACAAGAGATCTGATTGGACCAGCATGGGAGAAGCTGGGTCAGCTCAGGCAACTTCTTCAAACATGGGAAATGGTGAGAATTGTTCAAAGGTTCTGAGTTTTGATCTCAATCAGATTCCTGCTATGGATGGGGAAGAGGGTGTTCAATCAGATTTGTTTATTCCTGCTGCCAACATTATGACATCATCCAGTTATGATTCCTCTTGCTAA 1260 0.4635 MEEDQESRHQRENRGSVPREGEALEGNGGGVNCNEIRSFTCDICNKGFSSGKALGGHMRIHNLSRKRVHGEKQSTGDAAKSKTAKWVMVDGNPTCSVCGKSFSSRKSLFGHMRSHTEKAKKGIQSNAPIVGASSNSTSSSTLSDDLAVDLSRVLRGWSVTAKRGRISSSCSKSDSGLEEGDEIEPRMQEAAYELMLLARGSPKCEQEVVADQIQEHPFNKRGREEELSHPILGNSDDVKIKKRNRKKVKLTELASSGEGNKLAKCRKCNTTFPSHQSLNDHLCIVQNSKNIQSRSHGVSATKEEHDAKTTIQGEKTGAGTVLEGRAVEAMRGYECEVLNESFSIGQGFGDHKRSDWTSMGEAGSAQATSSNMGNGENCSKVLSFDLNQIPAMDGEEGVQSDLFIPAANIMTSSSYDSSC* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0253 419 Gene3D Classic Zinc Finger 94 146 - -
Vra7g0253 419 Gene3D Classic Zinc Finger 31 92 - -
Vra7g0253 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 3 303 - -
Vra7g0253 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 324 395 - -
Vra7g0253 419 SUPERFAMILY beta-beta-alpha zinc fingers 37 65 IPR036236 -
Vra7g0253 419 Pfam C2H2-type zinc finger 39 61 - -
Vra7g0253 419 Pfam C2H2-type zinc finger 95 116 - -
Vra7g0253 419 SMART c2h2final6 93 115 IPR013087 -
Vra7g0253 419 SMART c2h2final6 39 61 IPR013087 -
Vra7g0253 419 SMART c2h2final6 263 283 IPR013087 -
Vra7g0253 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Vra7g0253 419 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Vra7g0253 419 MobiDBLite consensus disorder prediction 1 19 - -
Vra7g0253 419 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vra7g0253 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Vra7g0253 419 SUPERFAMILY beta-beta-alpha zinc fingers 94 283 IPR036236 -
Vra7g0253 419 MobiDBLite consensus disorder prediction 127 142 - -
Vra7g0253 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 324 395 IPR044653 GO:0003700
Vra7g0253 419 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 3 303 IPR044653 GO:0003700
Vra7g0253 419 MobiDBLite consensus disorder prediction 118 142 - -
Vra7g0253 419 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0253 37 128 C2H2 Transcription Factor Family AT2G26940 35.965 3.99e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g0253 zf-C2H2_6 3.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0253 - - vra:106765955 818.15